Factsheet for Zm00001d037279_P005

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009504_P002
Zm00001d013426_P002
Zm00001d017979_P002	plasma membrane
Zm00001d032256_P001	plasma membrane
Zm00001d033751_P003
Zm00001d037279_P005	plasma membrane
Zm00001d038955_P001
Zm00001d044757_P006	plasma membrane
Zm00001d051815_P002	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	Zm00001d017979_P002	AT1G10290.1	25462567
AT1G10290.1	Zm00001d032256_P001	AT1G10290.1	25462567
AT1G10290.1	Zm00001d037279_P005	AT1G10290.1	25462567
AT1G10290.1	Zm00001d044757_P006	AT1G10290.1	25462567
AT1G10290.1	Zm00001d051815_P002	AT1G10290.1	25462567
AT1G10290.1	Zm00001d017979_P002	AT1G59610.1	25462567
AT1G10290.1	Zm00001d032256_P001	AT1G59610.1	25462567
AT1G10290.1	Zm00001d037279_P005	AT1G59610.1	25462567
AT1G10290.1	Zm00001d044757_P006	AT1G59610.1	25462567
AT1G10290.1	Zm00001d051815_P002	AT1G59610.1	25462567
AT1G10290.1	Zm00001d017979_P002	AT1G59610.1	25462567
AT1G10290.1	Zm00001d032256_P001	AT1G59610.1	25462567
AT1G10290.1	Zm00001d037279_P005	AT1G59610.1	25462567
AT1G10290.1	Zm00001d044757_P006	AT1G59610.1	25462567
AT1G10290.1	Zm00001d051815_P002	AT1G59610.1	25462567
AT1G59610.1	Zm00001d013426_P002	AT1G14830.1	21798944
AT1G59610.1	Zm00001d033751_P003	AT1G14830.1	21798944
AT1G59610.1	Zm00001d017979_P002	AT1G59610.1	25462567
AT1G59610.1	Zm00001d032256_P001	AT1G59610.1	25462567
AT1G59610.1	Zm00001d037279_P005	AT1G59610.1	25462567
AT1G59610.1	Zm00001d044757_P006	AT1G59610.1	25462567
AT1G59610.1	Zm00001d051815_P002	AT1G59610.1	25462567
AT1G59610.1	Zm00001d009504_P002	AT5G42080.1	20231465
AT1G59610.1	Zm00001d038955_P001	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	97.48	97.48
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	95.95	95.95
Os06t0247800-01	Rice	plasma membrane	90.25	90.45
TraesCS7D01G200900.1	Wheat	golgi, unclear	86.97	87.93
TraesCS7B01G104500.1	Wheat	golgi, unclear	86.97	87.93
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	86.86	87.82
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	86.53	87.58
Zm00001d017979_P002	Maize	extracellular, mitochondrion	85.98	85.23
GSMUA_Achr7P05530_001	Banana	nucleus	79.08	78.39
GSMUA_Achr4P20040_001	Banana	cytosol	78.31	77.8
CDY31035	Canola	cytosol	53.23	77.64
GSMUA_Achr1P18350_001	Banana	cytosol	75.68	77.29
VIT_18s0089g00350.t01	Wine grape	cytosol	77.98	76.48
CDY20643	Canola	cytosol	53.01	76.46
CDX94910	Canola	cytosol	39.65	76.21
GSMUA_Achr3P01090_001	Banana	nucleus	75.79	75.38
KRH36411	Soybean	endoplasmic reticulum, nucleus	75.58	74.84
KRH27552	Soybean	cytosol	75.58	74.84
AT1G10290.1	Thale cress	cytosol	73.93	73.85
Bra018449.1-P	Field mustard	cytosol	73.82	73.82
AT1G59610.1	Thale cress	cytosol	74.26	73.7
CDY45889	Canola	cytosol	74.26	73.7
CDX93442	Canola	cytosol	73.27	73.44
CDY04455	Canola	cytosol	73.82	73.42
CDY34897	Canola	cytosol	73.17	73.01
Bra031707.1-P	Field mustard	cytosol	73.17	73.01
CDY27283	Canola	cytosol	60.02	71.82
CDX94909	Canola	mitochondrion	57.06	71.66
Bra017901.1-P	Field mustard	cytosol	74.15	71.64
Bra019950.1-P	Field mustard	cytosol	73.27	71.25
CDY44550	Canola	cytosol	74.37	70.44
Bra035433.1-P	Field mustard	cytosol	74.04	67.53
VIT_15s0107g00170.t01	Wine grape	cytosol	16.98	65.96
VIT_00s0267g00020.t01	Wine grape	cytosol	10.51	61.15
Zm00001d032256_P001	Maize	cytosol	60.79	59.68
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	17.2	59.25
Zm00001d051815_P002	Maize	cytosol	35.27	58.65
Zm00001d030005_P002	Maize	cytosol, mitochondrion	12.71	28.86
Zm00001d033751_P003	Maize	plasma membrane	18.84	28.15
Zm00001d013426_P002	Maize	plasma membrane	18.62	27.82
Zm00001d005306_P002	Maize	cytosol, extracellular, mitochondrion	18.95	27.55
Zm00001d009504_P002	Maize	cytosol	18.62	25.91
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	18.51	25.22
Zm00001d042338_P002	Maize	extracellular, mitochondrion	17.74	19.83
Zm00001d012027_P002	Maize	cytosol	17.85	19.18
Zm00001d028495_P001	Maize	cytosol	11.17	15.13
Zm00001d028497_P001	Maize	cytosol	9.64	14.1
Zm00001d023583_P005	Maize	plastid	11.06	13.32
Zm00001d043451_P001	Maize	plastid	11.94	13.24
Zm00001d004012_P001	Maize	cytosol	15.22	12.71
Zm00001d012752_P006	Maize	plastid	11.28	12.28

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	ProteinID:AQK83482.1	ProteinID:AQK83484.1
EMBL:BT061075	UniProt:C0HFG9	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF
InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR001849
InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00169	PFAM:PF00350
PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF134	SMART:SM00053
SMART:SM00233	SMART:SM00302	SUPFAM:SSF50729	SUPFAM:SSF52540	UniParc:UPI00019486E9	EnsemblPlantsGene:Zm00001d037279
EnsemblPlants:Zm00001d037279_P005	EnsemblPlants:Zm00001d037279_T005	SEG:seg	:	:	:

Description

Dynamin-2A

Coordinates

chr6:+:119259155..119268022

Molecular Weight (calculated)

99656.1 Da

IEP (calculated)

9.715

GRAVY (calculated)

-0.559

Length

913 amino acids

Sequence
(BLAST)

001: MEAMEELSEL AESMRQAASL LADDDPSDDA APRRPTTFLN AVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIVVDL QREPGLSSKS IVLQIDSKSQ
101: QVSASALRHS LQDRLSRGAS GGSGRGRVDE IYLKLRTSTA PSLKLIDLPG IDQRAVDDSM INEYAGHNDA ILLIVIPAMQ AADVASSRAL RLAKDIDADG
201: TRTVGVISKV DQANGDAKTI ACVQALLSNK GPKNLPDIEW VALIGQSVAI ASAQSVGSEN SLETAWRAEA ESLKNILTGS PQNKLGRIAL VDTIAKQIRK
301: RMKVRVPNLL SGLQGKSQMV QDELARLGES MVQSAEGTRA VALELCREFE DKFLAHITSG EGSGWKIVAS FEGKFPDRIK QLPLDRHFDL NNVKRIVLEA
401: DGYQPYLISP EKGLRSLIKI VLEMAKEPSR LCVEEVHRVL LDIVNASANA TPGLGRYPPF KREVVAIASN ALETFKNDAK KMVVALVDME RAFVPPQHFI
501: RLVQRRMERQ RREDELRNRS SKKTQEAEQP TSKRASSPQT DAEQGGGSLK SMKDKSGQQD KDTKEGSNLQ VAGPAGEITA GYLLKKSAKT NGWSKRWFVL
601: NEKSGKLGYT KKQEERHFRG VITLEECNLE EVEEEEPSKS SKDSKKANGS EKISSLVFKI TNRVAYKTVL KAHSAVVLKA ESMADKVEWV NKIKAVIQSK
701: GGSFKGPSTE GSSMRQSNSD GALDTMARRP ADPEEELRWM SQEVRGYVEA VLNSLAANVP KAIVLCQVEK AKEDMLNQLY SSISGQSNAK IEELLQEDHN
801: AKRRREKYQK QSSLLSKLTR QLSIHDNRAS VSSYSNDTTE AESPRTPTRS GEDWRSAFDS ASNGPVAGST NSQSRSKSAD GRSRRYENGD VSSGANSGSR
901: RTPNRLPPAP PKY

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.