Factsheet for TraesCS7D01G200900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G385400.2
TraesCS1B01G411700.3
TraesCS1D01G393000.2
TraesCS4A01G266600.1
TraesCS4B01G047700.1
TraesCS4D01G047600.1
TraesCS6A01G312300.3	plasma membrane
TraesCS6B01G342500.2	plasma membrane
TraesCS6B01G443600.1
TraesCS6D01G291700.1	plasma membrane
TraesCS6D01G385300.1
TraesCS7A01G198100.1	plasma membrane
TraesCS7B01G104500.1	plasma membrane
TraesCS7D01G200900.1	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	TraesCS6A01G312300.3	AT1G10290.1	25462567
AT1G10290.1	TraesCS6B01G342500.2	AT1G10290.1	25462567
AT1G10290.1	TraesCS6D01G291700.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS7A01G198100.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS7B01G104500.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS7D01G200900.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS6A01G312300.3	AT1G59610.1	25462567
AT1G10290.1	TraesCS6B01G342500.2	AT1G59610.1	25462567
AT1G10290.1	TraesCS6D01G291700.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7A01G198100.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7B01G104500.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7D01G200900.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS6A01G312300.3	AT1G59610.1	25462567
AT1G10290.1	TraesCS6B01G342500.2	AT1G59610.1	25462567
AT1G10290.1	TraesCS6D01G291700.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7A01G198100.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7B01G104500.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7D01G200900.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS4A01G266600.1	AT1G14830.1	21798944
AT1G59610.1	TraesCS4B01G047700.1	AT1G14830.1	21798944
AT1G59610.1	TraesCS4D01G047600.1	AT1G14830.1	21798944
AT1G59610.1	TraesCS6A01G312300.3	AT1G59610.1	25462567
AT1G59610.1	TraesCS6B01G342500.2	AT1G59610.1	25462567
AT1G59610.1	TraesCS6D01G291700.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS7A01G198100.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS7B01G104500.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS7D01G200900.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS1A01G385400.2	AT5G42080.1	20231465
AT1G59610.1	TraesCS1B01G411700.3	AT5G42080.1	20231465
AT1G59610.1	TraesCS1D01G393000.2	AT5G42080.1	20231465
AT1G59610.1	TraesCS6B01G443600.1	AT5G42080.1	20231465
AT1G59610.1	TraesCS6D01G385300.1	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	99.22	99.22
TraesCS7B01G104500.1	Wheat	golgi, unclear	98.56	98.56
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	97.56	97.67
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	88.15	87.19
Zm00001d037279_P005	Maize	plasma membrane	87.93	86.97
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	87.82	86.86
Os06t0247800-01	Rice	plasma membrane	86.82	86.06
TraesCS6D01G291700.1	Wheat	nucleus	82.95	82.95
CDY31035	Canola	cytosol	52.82	76.2
CDX94910	Canola	cytosol	39.76	75.58
GSMUA_Achr7P05530_001	Banana	nucleus	76.97	75.46
CDY20643	Canola	cytosol	52.6	75.04
GSMUA_Achr4P20040_001	Banana	cytosol	76.3	74.97
GSMUA_Achr1P18350_001	Banana	cytosol	73.98	74.72
VIT_18s0089g00350.t01	Wine grape	cytosol	76.74	74.44
GSMUA_Achr3P01090_001	Banana	nucleus	74.86	73.64
KRH36411	Soybean	endoplasmic reticulum, nucleus	75.08	73.54
KRH27552	Soybean	cytosol	74.86	73.32
AT1G10290.1	Thale cress	cytosol	73.42	72.54
Bra018449.1-P	Field mustard	cytosol	73.31	72.51
CDX93442	Canola	cytosol	72.76	72.12
AT1G59610.1	Thale cress	cytosol	73.42	72.07
CDY45889	Canola	cytosol	73.2	71.85
CDY04455	Canola	cytosol	72.76	71.57
CDY34897	Canola	cytosol	72.43	71.48
Bra031707.1-P	Field mustard	cytosol	72.43	71.48
CDY27283	Canola	cytosol	59.47	70.38
CDX94909	Canola	mitochondrion	56.48	70.15
Bra019950.1-P	Field mustard	cytosol	72.76	69.97
Bra017901.1-P	Field mustard	cytosol	72.98	69.74
CDY44550	Canola	cytosol	73.09	68.46
VIT_15s0107g00170.t01	Wine grape	cytosol	17.39	66.81
Bra035433.1-P	Field mustard	cytosol	72.98	65.83
VIT_00s0267g00020.t01	Wine grape	cytosol	10.41	59.87
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	17.28	58.87
TraesCS1D01G216700.2	Wheat	cytosol	20.82	30.08
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	19.82	29.34
TraesCS1D01G393000.2	Wheat	cytosol	18.83	27.91
TraesCS2D01G279900.2	Wheat	cytosol	18.16	21.13
TraesCS3D01G423500.1	Wheat	cytosol	17.72	19.63
TraesCS6D01G385300.1	Wheat	cytosol	10.41	18.99
TraesCS5D01G082000.4	Wheat	cytosol	14.4	18.98
TraesCS4D01G098800.1	Wheat	cytosol	11.96	15.79
TraesCS4D01G217900.1	Wheat	cytosol	11.52	15.69
TraesCS5D01G124800.1	Wheat	cytosol	11.3	13.2
TraesCS3D01G272800.1	Wheat	plastid	11.63	12.85

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:G_DYNAMIN_dom	InterPro:IPR001849	InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase
PFAM:PF00169	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF134	SMART:SM00053	SMART:SM00233	SMART:SM00302	SUPFAM:SSF50729	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS7D01G200900	EnsemblPlants:TraesCS7D01G200900.1	TIGR:cd08771	SEG:seg	:	:

Description

No Description!

Coordinates

chr7D:+:159637166..159645218

Molecular Weight (calculated)

98662.2 Da

IEP (calculated)

9.799

GRAVY (calculated)

-0.558

Length

903 amino acids

Sequence
(BLAST)

001: MEAMEELSQL SESIRQAASL LADDDPSDDT APRRPSTFLN AVVLGNVGSG KSAVLNSLIG HPVLPTGENG ATRAPIVVDL QREPGLSTKS IVLQIDSKSQ
101: QVSASALRHS LQDRLSKSVS GRGRSDEILL KLRTSTAPPL KLIDLPGLDQ RAVDDSMIND YAGHNDAILL VVIPAVQAAE VASSRAIRLA KDIDPDGSRT
201: IGILSKIDQA DGDTKTIACV QALLLNKGPK NLPDIEWVAL VGQSVAIASA QSGSVGSENS LETAWQAEAE TLKSILTGAP HSKLGRVSLV STIAKQIRKR
301: MKVRLPNLLT GLQGKSQMVQ AELARLGESM VQSPEGTRAV ALELCREFED KFLAHITSGE GSGWKIVASF EGKFPDRIKQ LPLDRHFDLN NVKRIVLEAD
401: GYQPYLISPE KGLRSLIKIV LDMAKEPSRL CVDEVHRVLL DIVNASANAT PGLGRYPPFK REVVAIASNA LDSFKSDAKK MVVALVDMER AFVPAQHFIR
501: LVQRRMERQR REDEMKNRPS KKGQESEQSV TNRASSPQTK SEQAGGSSKP TKEKPSPDKD TKEGPNLQVA GPAGEITAGY LLKKSAKTNG WSRRWFVLNE
601: KSGKLGYTKK QEERHFRGVI TLEECNLEEV DEEEPSKSLK DSKKANGPEK GPSLVFKITN RVAYKTVLKA HSAVVLKAES TADKVEWVNK IKAVIQSKGG
701: SFKAANTEGG PLKQSQTDSS TDAMIRRPAD PEEELRWMSQ EVRGYVEAVL NSLAANVPKA IVLCQVEKAK EDMLNQLYSS ISGQSNAKIE ELLQEDHNAK
801: RRREKYQKQS SLLSKLTRQL SIHDNRAAAS SYSNDSPEAE SPRTPGRPGE DWRSAFDSAA NGPAPNIESR SRSADGRRRS ENGDPNSSSR RTPNRMPPAP
901: PRY

Best Arabidopsis Sequence Match ( AT1G10290.1 )
(BLAST)

001: MEAIDELSQL SDSMKQAASL LADEDPDETS SSKRPATFLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIEL SRESSLSSKA IILQIDNKSQ
101: QVSASALRHS LQDRLSKGAS GKNRDEINLK LRTSTAPPLK LVDLPGLDQR IVDESMIAEY AQHNDAILLV IVPASQASEI SSSRALKIAK EYDPESTRTI
201: GIIGKIDQAA ENSKALAAVQ ALLSNQGPPK TTDIPWVAVI GQSVSIASAQ SGSGENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPSVLSGLQ GKSQIVQDEL ARLGEQLVNS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKQLPL DRHFDLNNVK RVVLEADGYQ
401: PYLISPEKGL RSLIKIVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLSR ATSPQPDGPT AGGSLKSMKD KPSPQDKETP EVSGLKTAGP EGEITAGYLM KKSAKTNGWS RRWFVLNEKT
601: GKLGYTKKQE ERNFRGTITL EECTIEEIPE DEVEKSKSSK DKKANGPDSK GPGLVFKITC KVPYKTVLKA HNALVLKAES VVDKNEWINK LQKVIQARGG
701: QVGSVSMRQS LSEGSLDKMV RKPIDPEEEL RWMSQEVRGY VEAVLNSLAA NVPKAVVLCQ VEKAKEDMLN QLYSSISAIG NERIESLIQE DQNVKRRRER
801: YQKQSSLLSK LTRQLSIHDN RAAAASSYSD NSGTESSPRA SGGSSGDDWM NAFNSAANGP SDSLSKYGSG GHSRRYSDPA QNGDAASPGS GSNRRTTPNR
901: LPPAPPPTGS AYRY

Arabidopsis Description

DRP2ADRP2A [Source:UniProtKB/TrEMBL;Acc:A0A178WBB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.