Factsheet for VIT_18s0089g00350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05800.t01
VIT_13s0067g00550.t01
VIT_15s0107g00170.t01	plasma membrane
VIT_18s0089g00350.t01	plasma membrane
VIT_19s0015g02240.t01	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	VIT_15s0107g00170.t01	AT1G10290.1	25462567
AT1G10290.1	VIT_18s0089g00350.t01	AT1G10290.1	25462567
AT1G10290.1	VIT_19s0015g02240.t01	AT1G10290.1	25462567
AT1G10290.1	VIT_15s0107g00170.t01	AT1G59610.1	25462567
AT1G10290.1	VIT_18s0089g00350.t01	AT1G59610.1	25462567
AT1G10290.1	VIT_19s0015g02240.t01	AT1G59610.1	25462567
AT1G10290.1	VIT_15s0107g00170.t01	AT1G59610.1	25462567
AT1G10290.1	VIT_18s0089g00350.t01	AT1G59610.1	25462567
AT1G10290.1	VIT_19s0015g02240.t01	AT1G59610.1	25462567
AT1G59610.1	VIT_01s0011g05800.t01	AT1G14830.1	21798944
AT1G59610.1	VIT_15s0107g00170.t01	AT1G59610.1	25462567
AT1G59610.1	VIT_18s0089g00350.t01	AT1G59610.1	25462567
AT1G59610.1	VIT_19s0015g02240.t01	AT1G59610.1	25462567
AT1G59610.1	VIT_13s0067g00550.t01	AT2G40060.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0107g00170.t01	Wine grape	cytosol	22.77	90.21
VIT_12s0035g01740.t01	Wine grape	cytosol	85.93	86.96
KRH27552	Soybean	cytosol	85.71	86.55
KRH36411	Soybean	endoplasmic reticulum, nucleus	84.75	85.57
GSMUA_Achr7P05530_001	Banana	nucleus	83.03	83.93
VIT_00s0267g00020.t01	Wine grape	cytosol	14.07	83.44
GSMUA_Achr1P18350_001	Banana	cytosol	79.91	83.22
CDX94910	Canola	cytosol	42.43	83.16
GSMUA_Achr4P20040_001	Banana	cytosol	81.53	82.59
AT1G10290.1	Thale cress	cytosol	80.45	81.95
CDY31035	Canola	cytosol	54.99	81.79
AT1G59610.1	Thale cress	cytosol	80.34	81.3
CDY45889	Canola	cytosol	79.91	80.87
CDY04455	Canola	cytosol	79.7	80.83
CDY20643	Canola	cytosol	54.89	80.73
CDX93442	Canola	cytosol	78.63	80.35
CDY34897	Canola	cytosol	78.84	80.22
Bra031707.1-P	Field mustard	cytosol	78.84	80.22
GSMUA_Achr3P01090_001	Banana	nucleus	79.05	80.17
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	22.77	80.0
Bra018449.1-P	Field mustard	cytosol	78.2	79.74
VIT_02s0087g00010.t01	Wine grape	cytosol	15.79	79.03
Bra017901.1-P	Field mustard	cytosol	79.81	78.62
CDX94909	Canola	mitochondrion	61.22	78.4
CDY27283	Canola	cytosol	64.12	78.24
Zm00001d037279_P005	Maize	plasma membrane	76.48	77.98
Bra019950.1-P	Field mustard	cytosol	78.63	77.96
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	76.15	77.66
EES05560	Sorghum	nucleus	76.8	77.63
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	75.94	77.44
CDY44550	Canola	cytosol	80.02	77.28
Zm00001d017979_P002	Maize	extracellular, mitochondrion	76.37	77.2
Os02t0738900-01	Rice	plasma membrane	76.15	76.81
TraesCS7D01G200900.1	Wheat	golgi, unclear	74.44	76.74
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	74.22	76.52
TraesCS7B01G104500.1	Wheat	golgi, unclear	74.22	76.52
TraesCS6D01G291700.1	Wheat	nucleus	74.11	76.41
Os06t0247800-01	Rice	plasma membrane	74.65	76.29
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	73.9	76.27
TraesCS6A01G312300.3	Wheat	nucleus	74.11	75.82
VIT_03s0110g00120.t01	Wine grape	cytosol	19.98	75.3
VIT_03s0038g00540.t01	Wine grape	cytosol	14.07	74.43
Bra035433.1-P	Field mustard	cytosol	79.91	74.33
KXG25176	Sorghum	cytosol	58.11	71.94
Os08t0425100-01	Rice	plasma membrane	59.18	71.93
TraesCS6B01G342500.2	Wheat	cytosol	70.78	71.4
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	74.44	71.37
Zm00001d032256_P001	Maize	cytosol	60.58	60.65
Zm00001d051815_P002	Maize	cytosol	32.44	55.01
VIT_02s0012g00740.t01	Wine grape	cytosol	19.76	30.02
VIT_15s0021g00480.t01	Wine grape	cytosol	19.87	29.89
VIT_15s0046g00470.t01	Wine grape	cytosol	19.44	29.48
VIT_01s0011g05800.t01	Wine grape	cytosol	19.33	29.36
VIT_02s0025g01570.t01	Wine grape	cytosol, extracellular	18.15	27.75
VIT_03s0038g00970.t01	Wine grape	cytosol	17.94	20.0
VIT_04s0008g07010.t01	Wine grape	cytosol	13.64	19.6
VIT_12s0055g00490.t01	Wine grape	cytosol	11.82	14.23
VIT_19s0014g02500.t01	Wine grape	plastid	11.6	12.89
HORVU4Hr1G074040.2	Barley	nucleus	2.47	8.98
HORVU5Hr1G092990.14	Barley	cytosol	2.47	8.68
HORVU4Hr1G073960.12	Barley	cytosol	3.65	8.52

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100255051	wikigene:100255051	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300
ProteinID:CBI17030	ProteinID:CBI17030.3	ncoils:Coil	UniProt:D7SN01	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	EMBL:FN594956	InterPro:GED	InterPro:GED_dom	GO:GO:0000166
GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR001849
InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381	EntrezGene:LOC100255051	wikigene:LOC100255051	InterPro:P-loop_NTPase
PFAM:PF00169	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF57	SMART:SM00053	SMART:SM00233	SUPFAM:SSF50729	SUPFAM:SSF52540	TIGR:TC65094
TIGR:TC70761	UniParc:UPI000198558E	ArrayExpress:VIT_18s0089g00350	EnsemblPlantsGene:VIT_18s0089g00350	EnsemblPlants:VIT_18s0089g00350.t01	unigene:Vvi.3350
RefSeq:XP_002271285	RefSeq:XP_002271285.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:28120602..28137270

Molecular Weight (calculated)

100939.0 Da

IEP (calculated)

9.548

GRAVY (calculated)

-0.480

Length

931 amino acids

Sequence
(BLAST)

001: MEAIDELVQL SESMRQAAAL LADEDVDENS SSSSSRRGST FLNVVALGNV GAGKSAVLNS LIGHPVLPTG ENGATRAPIC IDLQKDGSLS SKSIILQIDN
101: KSQQVSASAL RHSLQDRLSK GASGKSRDEI YLKLRTSTAP PLKLVDLPGL DQRIMDETLV SDYAQHNDAI LLVIVPAAQA PEIASSRALK IAKEYDGDGT
201: RTIGVISKID QAASDQKILA AVQALLLNQG PRSTSEMPWV ALIGQSVSIA SAQSGSVGSE NSLETAWRAE SESLKSILTG APQSKLGRIA LVDALAQQIR
301: SRMKVRLPNL LSGLQGKSQI VGDELARLGE QMVHSSEGTR AIALELCREF EDKFLLHIAG GEGAGWKVVA SFEGNFPNRI KQLPLDRHFD INNVKRIVLE
401: ADGYQPYLIS PEKGLRSLIK GVLELAKEPS RLCVDEVHRV LVDVVSAAAN ATPGLGRYPP FKREVVAIAT AALDVFKNEA KKMVVALVDM ERAFVPPQHF
501: IRLVQRRMER QRREEELKNR SSKKGHEAEQ SILNRATSPQ TGGQQSGGSL KSMKDKSGQS EKETQEGSAL KIAGPGGEIT AGFLLKKSEK TNGWSRRWFV
601: LNEKTGKLGY TKKQEERHFR GVITLEECNV EEVSDEEEPP RKSSKDKKAN GPDSGKNTSL VFKITSKVPY KTVLKAHSAV VLKAESMADK VEWVNKISSV
701: IQPSKGGQMK GASTEGGLTM RQSLSDGSLD TMVRRPADPE EELRWMSQEV RGYVEAVLNS LAANVPKAVV LCQVEKAKED MLNQLYSSIS AQSTARIEEL
801: LLEDQNVKRR RERYQKQSSL LSKLTRQLSI HDNRATAASS WSNGVGGAES SPKTSGPSGG DDWRSAFDAA ANGPVDYNSD LSRSGSNGHS RHYSDPAQNG
901: DVSSGSNSSR RTPNRRPPAP PPSGSSGYKF F

Best Arabidopsis Sequence Match ( AT1G10290.1 )
(BLAST)

001: MEAIDELSQL SDSMKQAASL LADEDPDETS SSKRPATFLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIEL SRESSLSSKA IILQIDNKSQ
101: QVSASALRHS LQDRLSKGAS GKNRDEINLK LRTSTAPPLK LVDLPGLDQR IVDESMIAEY AQHNDAILLV IVPASQASEI SSSRALKIAK EYDPESTRTI
201: GIIGKIDQAA ENSKALAAVQ ALLSNQGPPK TTDIPWVAVI GQSVSIASAQ SGSGENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPSVLSGLQ GKSQIVQDEL ARLGEQLVNS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKQLPL DRHFDLNNVK RVVLEADGYQ
401: PYLISPEKGL RSLIKIVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLSR ATSPQPDGPT AGGSLKSMKD KPSPQDKETP EVSGLKTAGP EGEITAGYLM KKSAKTNGWS RRWFVLNEKT
601: GKLGYTKKQE ERNFRGTITL EECTIEEIPE DEVEKSKSSK DKKANGPDSK GPGLVFKITC KVPYKTVLKA HNALVLKAES VVDKNEWINK LQKVIQARGG
701: QVGSVSMRQS LSEGSLDKMV RKPIDPEEEL RWMSQEVRGY VEAVLNSLAA NVPKAVVLCQ VEKAKEDMLN QLYSSISAIG NERIESLIQE DQNVKRRRER
801: YQKQSSLLSK LTRQLSIHDN RAAAASSYSD NSGTESSPRA SGGSSGDDWM NAFNSAANGP SDSLSKYGSG GHSRRYSDPA QNGDAASPGS GSNRRTTPNR
901: LPPAPPPTGS AYRY

Arabidopsis Description

DRP2ADRP2A [Source:UniProtKB/TrEMBL;Acc:A0A178WBB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.