Factsheet for VIT_02s0012g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g00480.t01	Wine grape	cytosol	88.91	88.05
VIT_01s0011g05800.t01	Wine grape	cytosol	81.08	81.08
VIT_02s0025g01570.t01	Wine grape	cytosol, extracellular	72.92	73.4
VIT_15s0046g00470.t01	Wine grape	cytosol	71.78	71.66
VIT_04s0008g07010.t01	Wine grape	cytosol	29.36	27.78
VIT_03s0038g00970.t01	Wine grape	cytosol	36.7	26.95
VIT_15s0107g00170.t01	Wine grape	cytosol	9.95	25.96
VIT_00s0267g00020.t01	Wine grape	cytosol	6.53	25.48
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	9.79	22.64
VIT_18s0089g00350.t01	Wine grape	cytosol	30.02	19.76
VIT_12s0035g01740.t01	Wine grape	cytosol	28.87	19.24
VIT_19s0014g02500.t01	Wine grape	plastid	21.7	15.87
VIT_12s0055g00490.t01	Wine grape	cytosol	19.9	15.78
VIT_03s0110g00120.t01	Wine grape	cytosol	4.73	11.74
VIT_02s0087g00010.t01	Wine grape	cytosol	3.43	11.29
VIT_03s0038g00540.t01	Wine grape	cytosol	2.94	10.23

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100247147	wikigene:100247147	MapMan:22.1.7.1	Gene3D:3.40.50.300	ProteinID:CBI33933
ProteinID:CBI33933.3	UniProt:D7TTF4	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central
EMBL:FN596247	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	EntrezGene:LOC100247147
wikigene:LOC100247147	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195
ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF77	SMART:SM00053
SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI00015C90EC	ArrayExpress:VIT_02s0012g00740	EnsemblPlantsGene:VIT_02s0012g00740	EnsemblPlants:VIT_02s0012g00740.t01
unigene:Vvi.20991	RefSeq:XP_002281722	RefSeq:XP_002281722.1	RefSeq:XP_002281736	RefSeq:XP_002281736.2	RefSeq:XP_003631492
RefSeq:XP_003631492.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:6646932..6657662

Molecular Weight (calculated)

68798.5 Da

IEP (calculated)

7.961

GRAVY (calculated)

-0.358

Length

613 amino acids

Sequence
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGDSAL PTLWEALPSV AVVGGQSSGK SSVLESIVGR DFLPRGSGIV TRRPLVLQLH KTEEGLQEYA EFLHLPKRRF
101: TDFSIVRKEI QDETDRMTGR TKQISPVPIH LSIYSANVVN LTLIDLPGLT KVAVEGQPES IVQDIENMVR SYIEKPNCII LAISPANQDI ATSDAMKLSR
201: EVDPTGERTF GVLTKLDLMD KGTNALDVLE GRSYRLLHPW VGIVNRSQAD INKNVDMIAA RRREREFFAT SPDYGHLSSK MGSEYLAKLL SKHLEAVIRA
301: RIPSITSLIN KSIDELEGEL DHLGRPIAID AGAQLYTILE LCRAFDRIFK EHLEGGRPGG DRIYGVFDNQ LPSALRKLPF DRHLSLQNVR KVISEADGYQ
401: PHLIAPEQGY RRLIDSSLNY FRGPAEASVD AVHFVLKELV RRSIGETKEL RRFPTLQAEL AAASNEALER FREESKKTTL RLVEMESSYL TVDFFRKLPQ
501: EVEKGGNPSA SAADRYGEGH FRRIGSNVSQ YVAMVSETLK NSIPKAVVHC QVREAKRSLL DHFYTQVGKK EGKQLSQLLD EDPALMERRQ QCAKRLELYK
601: SARDEIDSVS WSR

Best Arabidopsis Sequence Match ( AT3G60190.1 )
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGGTGS NAFNSLWEAL PTVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKTDDGTE EYAEFLHLPK
101: KQFTDFALVR REIQDETDRI TGKNKQISPV PIHLSIYSPN VVNLTLIDLP GLTKVAVEGQ PETIAEDIES MVRTYVDKPN CIILAISPAN QDIATSDAIK
201: LAKDVDPTGE RTFGVLTKLD LMDKGTNALE VLEGRSYRLQ HPWVGIVNRS QADINKNVDM MLARRKEREY FDTSPDYGHL ASKMGSEYLA KLLSKHLESV
301: IRTRIPSILS LINKSIEELE RELDRMGRPV AVDAGAQLYT ILEMCRAFDK IFKEHLDGGR PGGDRIYGVF DNQLPAALKK LPFDRHLSLQ SVKKIVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVHYVLK ELVRKSISET EELKRFPSLQ VELAAAANSS LEKFREESKK SVIRLVDMES AYLTAEFFRK
501: LPQEIERPVT NSKNQTASPS SATLDQYGDG HFRRIASNVS AYVNMVSDTL RNTIPKACVY CQVRQAKLAL LNYFYSQISK REGKQLGQLL DEDPALMDRR
601: LECAKRLELY KKARDEIDAV AWVR

Arabidopsis Description

DRP1EDynamin-related protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.