Factsheet for VIT_15s0107g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05800.t01
VIT_13s0067g00550.t01
VIT_15s0107g00170.t01	plasma membrane
VIT_18s0089g00350.t01	plasma membrane
VIT_19s0015g02240.t01	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	VIT_15s0107g00170.t01	AT1G10290.1	25462567
AT1G10290.1	VIT_18s0089g00350.t01	AT1G10290.1	25462567
AT1G10290.1	VIT_19s0015g02240.t01	AT1G10290.1	25462567
AT1G10290.1	VIT_15s0107g00170.t01	AT1G59610.1	25462567
AT1G10290.1	VIT_18s0089g00350.t01	AT1G59610.1	25462567
AT1G10290.1	VIT_19s0015g02240.t01	AT1G59610.1	25462567
AT1G10290.1	VIT_15s0107g00170.t01	AT1G59610.1	25462567
AT1G10290.1	VIT_18s0089g00350.t01	AT1G59610.1	25462567
AT1G10290.1	VIT_19s0015g02240.t01	AT1G59610.1	25462567
AT1G59610.1	VIT_01s0011g05800.t01	AT1G14830.1	21798944
AT1G59610.1	VIT_15s0107g00170.t01	AT1G59610.1	25462567
AT1G59610.1	VIT_18s0089g00350.t01	AT1G59610.1	25462567
AT1G59610.1	VIT_19s0015g02240.t01	AT1G59610.1	25462567
AT1G59610.1	VIT_13s0067g00550.t01	AT2G40060.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	85.11	75.47
VIT_00s0267g00020.t01	Wine grape	cytosol	47.23	70.7
CDX94910	Canola	cytosol	73.62	36.42
CDY31035	Canola	cytosol	70.64	26.52
CDY20643	Canola	cytosol	70.64	26.22
VIT_18s0089g00350.t01	Wine grape	cytosol	90.21	22.77
KXG25176	Sorghum	cytosol	65.96	20.61
KRH27552	Soybean	cytosol	80.0	20.39
Os08t0425100-01	Rice	plasma membrane	66.38	20.37
KRH36411	Soybean	endoplasmic reticulum, nucleus	79.57	20.28
VIT_12s0035g01740.t01	Wine grape	cytosol	77.87	19.89
GSMUA_Achr1P18350_001	Banana	cytosol	74.89	19.69
AT1G10290.1	Thale cress	cytosol	76.17	19.58
GSMUA_Achr4P20040_001	Banana	cytosol	76.17	19.48
GSMUA_Achr7P05530_001	Banana	nucleus	75.74	19.33
CDX93442	Canola	cytosol	74.47	19.21
GSMUA_Achr3P01090_001	Banana	nucleus	74.89	19.17
Bra031707.1-P	Field mustard	cytosol	74.47	19.13
CDY34897	Canola	cytosol	74.47	19.13
AT1G59610.1	Thale cress	cytosol	74.04	18.91
CDY04455	Canola	cytosol	73.62	18.85
CDY45889	Canola	cytosol	73.62	18.8
Bra019950.1-P	Field mustard	cytosol	74.47	18.64
Bra018449.1-P	Field mustard	cytosol	72.34	18.62
Bra017901.1-P	Field mustard	cytosol	74.04	18.41
Os02t0738900-01	Rice	plasma membrane	71.06	18.09
CDY44550	Canola	cytosol	74.04	18.05
EES05560	Sorghum	nucleus	70.21	17.92
Zm00001d017979_P002	Maize	extracellular, mitochondrion	70.21	17.92
TraesCS6D01G291700.1	Wheat	nucleus	67.23	17.5
TraesCS6A01G312300.3	Wheat	nucleus	67.66	17.47
Os06t0247800-01	Rice	plasma membrane	67.66	17.45
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	66.81	17.39
TraesCS7D01G200900.1	Wheat	golgi, unclear	66.81	17.39
Bra035433.1-P	Field mustard	cytosol	74.04	17.38
TraesCS7B01G104500.1	Wheat	golgi, unclear	66.38	17.28
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	66.81	17.2
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	66.38	17.09
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	65.53	17.07
TraesCS6B01G342500.2	Wheat	cytosol	66.81	17.01
Zm00001d037279_P005	Maize	plasma membrane	65.96	16.98
Zm00001d032256_P001	Maize	cytosol	65.53	16.56
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	67.23	16.27
CDY27283	Canola	cytosol	36.17	11.14
VIT_02s0012g00740.t01	Wine grape	cytosol	25.96	9.95
VIT_15s0021g00480.t01	Wine grape	cytosol	25.53	9.69
VIT_01s0011g05800.t01	Wine grape	cytosol	24.68	9.46
VIT_15s0046g00470.t01	Wine grape	cytosol	24.68	9.45
VIT_02s0025g01570.t01	Wine grape	cytosol, extracellular	24.26	9.36
VIT_03s0038g00970.t01	Wine grape	cytosol	23.4	6.59
VIT_04s0008g07010.t01	Wine grape	cytosol	16.6	6.02
VIT_19s0014g02500.t01	Wine grape	plastid	20.43	5.73
VIT_12s0055g00490.t01	Wine grape	cytosol	18.3	5.56
CDX94909	Canola	mitochondrion	17.02	5.5
VIT_03s0110g00120.t01	Wine grape	cytosol	3.4	3.24
VIT_02s0087g00010.t01	Wine grape	cytosol	1.7	2.15
HORVU4Hr1G074040.2	Barley	nucleus	2.13	1.95
HORVU5Hr1G092990.14	Barley	cytosol	2.13	1.89
HORVU4Hr1G073960.12	Barley	cytosol	2.13	1.25
VIT_03s0038g00540.t01	Wine grape	cytosol	0.0	0.0
Zm00001d051815_P002	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB60875	ProteinID:CCB60875.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF
UniProt:F6I1Q8	EMBL:FN596514	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350	PRINTS:PR00195
PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF136	SMART:SM00053	SUPFAM:SSF52540	UniParc:UPI000210A7FA
ArrayExpress:VIT_15s0107g00170	EnsemblPlantsGene:VIT_15s0107g00170	EnsemblPlants:VIT_15s0107g00170.t01	:	:	:

Description

No Description!

Coordinates

chr15:+:8211666..8224960

Molecular Weight (calculated)

24819.0 Da

IEP (calculated)

5.704

GRAVY (calculated)

0.121

Length

235 amino acids

Sequence
(BLAST)

001: MEAIDELMQL SGGSTFLNVV ALGNVGAGKS AVLNNLIGHP VLPIGENGAT QALICIDLQK DGSLSSKSII LQIANKSQQV SASALRHCLQ DRLSKGASGK
101: NQDEIYLKLR TSTTPPLKLV DFPGLDQRIM DETLVSDYAQ HNDAILLVIV PAVQAPEMAS SRALKIAKEY DGDGTRTIGV ISKIDQAASD QKILVVVQAL
201: LLNQGPRSTS EMPWVALIGQ FVSIASAQSG FIGSA

Best Arabidopsis Sequence Match ( AT1G10290.1 )
(BLAST)

001: MEAIDELSQL SDSMKQAASL LADEDPDETS SSKRPATFLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIEL SRESSLSSKA IILQIDNKSQ
101: QVSASALRHS LQDRLSKGAS GKNRDEINLK LRTSTAPPLK LVDLPGLDQR IVDESMIAEY AQHNDAILLV IVPASQASEI SSSRALKIAK EYDPESTRTI
201: GIIGKIDQAA ENSKALAAVQ ALLSNQGPPK TTDIPWVAVI GQSVSIASAQ SGSGENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPSVLSGLQ GKSQIVQDEL ARLGEQLVNS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKQLPL DRHFDLNNVK RVVLEADGYQ
401: PYLISPEKGL RSLIKIVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLSR ATSPQPDGPT AGGSLKSMKD KPSPQDKETP EVSGLKTAGP EGEITAGYLM KKSAKTNGWS RRWFVLNEKT
601: GKLGYTKKQE ERNFRGTITL EECTIEEIPE DEVEKSKSSK DKKANGPDSK GPGLVFKITC KVPYKTVLKA HNALVLKAES VVDKNEWINK LQKVIQARGG
701: QVGSVSMRQS LSEGSLDKMV RKPIDPEEEL RWMSQEVRGY VEAVLNSLAA NVPKAVVLCQ VEKAKEDMLN QLYSSISAIG NERIESLIQE DQNVKRRRER
801: YQKQSSLLSK LTRQLSIHDN RAAAASSYSD NSGTESSPRA SGGSSGDDWM NAFNSAANGP SDSLSKYGSG GHSRRYSDPA QNGDAASPGS GSNRRTTPNR
901: LPPAPPPTGS AYRY

Arabidopsis Description

DRP2ADRP2A [Source:UniProtKB/TrEMBL;Acc:A0A178WBB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.