Factsheet for Os02t0738900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 20663087
plasma membrane: 20663087

plasma membrane: 19502382
nucleus: 19621931
plasma membrane: 27800704

gfp PMID: 20663087 doi

G Xiong, R Li, Q Qian, X Song, X Liu, Y Yu, D Zeng, J Wan, J Li, Y Zhou

State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0681100-01
Os02t0738900-01	plasma membrane
Os03t0713100-01
Os05t0556100-01
Os06t0247800-01	plasma membrane
Os08t0425100-01	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	Os02t0738900-01	AT1G10290.1	25462567
AT1G10290.1	Os06t0247800-01	AT1G10290.1	25462567
AT1G10290.1	Os08t0425100-01	AT1G10290.1	25462567
AT1G10290.1	Os02t0738900-01	AT1G59610.1	25462567
AT1G10290.1	Os06t0247800-01	AT1G59610.1	25462567
AT1G10290.1	Os08t0425100-01	AT1G59610.1	25462567
AT1G10290.1	Os02t0738900-01	AT1G59610.1	25462567
AT1G10290.1	Os06t0247800-01	AT1G59610.1	25462567
AT1G10290.1	Os08t0425100-01	AT1G59610.1	25462567
AT1G59610.1	Os03t0713100-01	AT1G14830.1	21798944
AT1G59610.1	Os02t0738900-01	AT1G59610.1	25462567
AT1G59610.1	Os06t0247800-01	AT1G59610.1	25462567
AT1G59610.1	Os08t0425100-01	AT1G59610.1	25462567
AT1G59610.1	Os01t0681100-01	AT5G42080.1	20231465
AT1G59610.1	Os05t0556100-01	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05560	Sorghum	nucleus	89.6	89.79
Zm00001d017979_P002	Maize	extracellular, mitochondrion	89.49	89.69
TraesCS6A01G312300.3	Wheat	nucleus	87.32	88.57
TraesCS6D01G291700.1	Wheat	nucleus	86.57	88.48
Os06t0247800-01	Rice	plasma membrane	83.86	84.96
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	87.54	83.21
TraesCS6B01G342500.2	Wheat	cytosol	82.34	82.34
GSMUA_Achr7P05530_001	Banana	nucleus	76.49	76.66
GSMUA_Achr1P18350_001	Banana	cytosol	74.21	76.62
GSMUA_Achr4P20040_001	Banana	cytosol	75.95	76.28
CDX94910	Canola	cytosol	39.22	76.21
VIT_18s0089g00350.t01	Wine grape	cytosol	76.81	76.15
CDY31035	Canola	cytosol	51.14	75.4
CDY20643	Canola	cytosol	50.92	74.25
GSMUA_Achr3P01090_001	Banana	nucleus	73.56	73.97
KRH27552	Soybean	cytosol	73.78	73.86
KRH36411	Soybean	endoplasmic reticulum, nucleus	73.67	73.75
AT1G10290.1	Thale cress	cytosol	72.26	72.98
AT1G59610.1	Thale cress	cytosol	72.37	72.61
CDY45889	Canola	cytosol	72.16	72.39
CDX93442	Canola	cytosol	71.4	72.34
CDY04455	Canola	cytosol	71.94	72.33
Bra018449.1-P	Field mustard	cytosol	71.51	72.29
CDY34897	Canola	cytosol	71.18	71.8
Bra031707.1-P	Field mustard	cytosol	71.18	71.8
VIT_15s0107g00170.t01	Wine grape	cytosol	18.09	71.06
Bra017901.1-P	Field mustard	cytosol	72.16	70.48
Bra019950.1-P	Field mustard	cytosol	71.4	70.18
CDX94909	Canola	mitochondrion	55.04	69.88
Os08t0425100-01	Rice	plasma membrane	57.96	69.84
CDY27283	Canola	cytosol	57.64	69.72
CDY44550	Canola	cytosol	72.16	69.09
Bra035433.1-P	Field mustard	cytosol	71.94	66.33
VIT_00s0267g00020.t01	Wine grape	cytosol	11.16	65.61
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	18.2	63.4
Os10t0567800-01	Rice	plasma membrane	19.39	28.96
Os09t0572900-01	Rice	cytosol, plasma membrane	19.61	28.91
Os03t0713100-01	Rice	plasma membrane	18.42	27.82
Os05t0556100-01	Rice	plasma membrane	18.09	27.42
Os01t0681100-01	Rice	cytosol, plasma membrane	4.44	22.28
Os04t0381000-01	Rice	cytosol	18.2	20.69
Os01t0920400-01	Rice	nucleus, plastid	17.77	20.05
Os03t0260000-01	Rice	cytosol	12.46	16.96
Os04t0129900-01	Rice	cytosol	12.13	16.37
Os12t0178700-01	Rice	cytosol	8.02	13.24
Os01t0748000-00	Rice	plastid	11.38	12.77

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	EntrezGene:4330669	ProteinID:BAF09978.1
ProteinID:BAS80830.1	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central
ProteinID:EEE57775.1	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR001849	InterPro:IPR011993	InterPro:IPR020850
InterPro:IPR030381	EnsemblPlantsGene:Os02g0738900	EnsemblPlants:Os02t0738900-01	InterPro:P-loop_NTPase	PFAM:PF00169	PFAM:PF00350
PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF134	UniProt:Q0DXR0
SMART:SM00053	SMART:SM00233	SMART:SM00302	SUPFAM:SSF50729	SUPFAM:SSF52540	UniParc:UPI0000DF0865
RefSeq:XP_015626661.1	SEG:seg	:	:	:	:

Description

BRITTLE CULM 3Dynamin-related protein, Secondary cell wall cellulose biosynthesis (Os02t0738900-01)

Coordinates

chr2:-:30861675..30871171

Molecular Weight (calculated)

100398.0 Da

IEP (calculated)

9.743

GRAVY (calculated)

-0.541

Length

923 amino acids

Sequence
(BLAST)

001: MSSSAMEAMD ELVQLAESMR QAASLLADDD PSDEASPRRP STFLNAVALG NVGAGKSAVL NSLIGHPVLP TGENGATRAP IVVDLQRDPG LSSKSIVLQI
101: DSKSQQVSAS ALRHSLQDRL SKGASGGSGK GRNDEIYLKL RTSTAPPIKL VDLPGIDQRV MDDSTISEYA GHNDAILIVV IPAMQAADVA SSRALRLAKD
201: IDPDGTRTIG VLSKIDQASA DAKTVSCVQA ILSNKGAPRA AAEIEWVALI GQSVSIASAQ AGSVGSENSL ETAWQAEAET LKSILTGAPR SKLGRIALVD
301: TIAKQIRKRM KIRLPNLLSG LQGKSQIVQN ELARLGEQMV SSAEGTRAVA LELCREFEDK FLAHVTSGEG SGWKIVASFE GKFPDRIKQL PLDRHFDINN
401: VKRIVLEADG YQPYLISPEK GLKSLIKGVL EMAKEPSRLC VEEVHRVLLD IVNASANATP GLGRYPPFKR EVVEIATNAL DVFKSDAKKM VVALVDMERA
501: FVPPQHFIRL VQRRMERQRR EDEVKNRSSK KAQDAEQSNK GSGTGSEQSG GALKSLKEKF SQQDKDKDAK EGPNLQVAGP GGEITAGYLL KKSAKNNEWS
601: KRWFVLNEKS GKLGYTKKQE ERHFRGVIVL EECNLEEIEE EELSKSLKDS KKANGAEKGP SLVFKITNRV AYKTVLKSHS AVILKAETIA DKVEWMKKIR
701: GVIQSKGGSV KGLNTPEGGS MRQSHSDGSL DTMARKPADP EEELRWMSQE VRGYVEAVLN SLAANVPKAI VLCQVEKAKE DMLNQLYSKI SAQTNAKIEE
801: LLQEDHNAKR RREKYQKQSS LLSKLTRQLS IHDNRASVAS YTNDSSGAES SPRTSGQSGE DWRSAFDSAS NGSVDRSSSH NETRSRSADS RGKRYENGDV
901: NGGNSGSRRT PNRLPPAPPG QKY

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.