Factsheet for TraesCS6A01G312300.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G385400.2
TraesCS1B01G411700.3
TraesCS1D01G393000.2
TraesCS4A01G266600.1
TraesCS4B01G047700.1
TraesCS4D01G047600.1
TraesCS6A01G312300.3	plasma membrane
TraesCS6B01G342500.2	plasma membrane
TraesCS6B01G443600.1
TraesCS6D01G291700.1	plasma membrane
TraesCS6D01G385300.1
TraesCS7A01G198100.1	plasma membrane
TraesCS7B01G104500.1	plasma membrane
TraesCS7D01G200900.1	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10290.1	TraesCS6A01G312300.3	AT1G10290.1	25462567
AT1G10290.1	TraesCS6B01G342500.2	AT1G10290.1	25462567
AT1G10290.1	TraesCS6D01G291700.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS7A01G198100.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS7B01G104500.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS7D01G200900.1	AT1G10290.1	25462567
AT1G10290.1	TraesCS6A01G312300.3	AT1G59610.1	25462567
AT1G10290.1	TraesCS6B01G342500.2	AT1G59610.1	25462567
AT1G10290.1	TraesCS6D01G291700.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7A01G198100.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7B01G104500.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7D01G200900.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS6A01G312300.3	AT1G59610.1	25462567
AT1G10290.1	TraesCS6B01G342500.2	AT1G59610.1	25462567
AT1G10290.1	TraesCS6D01G291700.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7A01G198100.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7B01G104500.1	AT1G59610.1	25462567
AT1G10290.1	TraesCS7D01G200900.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS4A01G266600.1	AT1G14830.1	21798944
AT1G59610.1	TraesCS4B01G047700.1	AT1G14830.1	21798944
AT1G59610.1	TraesCS4D01G047600.1	AT1G14830.1	21798944
AT1G59610.1	TraesCS6A01G312300.3	AT1G59610.1	25462567
AT1G59610.1	TraesCS6B01G342500.2	AT1G59610.1	25462567
AT1G59610.1	TraesCS6D01G291700.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS7A01G198100.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS7B01G104500.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS7D01G200900.1	AT1G59610.1	25462567
AT1G59610.1	TraesCS1A01G385400.2	AT5G42080.1	20231465
AT1G59610.1	TraesCS1B01G411700.3	AT5G42080.1	20231465
AT1G59610.1	TraesCS1D01G393000.2	AT5G42080.1	20231465
AT1G59610.1	TraesCS6B01G443600.1	AT5G42080.1	20231465
AT1G59610.1	TraesCS6D01G385300.1	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G291700.1	Wheat	nucleus	98.79	99.56
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	98.9	92.69
TraesCS6B01G342500.2	Wheat	cytosol	92.31	91.01
EES05560	Sorghum	nucleus	88.68	87.62
Os02t0738900-01	Rice	plasma membrane	88.57	87.32
Zm00001d017979_P002	Maize	extracellular, mitochondrion	88.24	87.19
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	82.31	82.95
GSMUA_Achr7P05530_001	Banana	nucleus	76.81	75.9
GSMUA_Achr1P18350_001	Banana	cytosol	73.74	75.06
GSMUA_Achr4P20040_001	Banana	cytosol	75.38	74.65
CDX94910	Canola	cytosol	38.9	74.53
VIT_18s0089g00350.t01	Wine grape	cytosol	75.82	74.11
CDY31035	Canola	cytosol	50.44	73.32
GSMUA_Achr3P01090_001	Banana	nucleus	73.52	72.88
KRH27552	Soybean	cytosol	73.74	72.78
KRH36411	Soybean	endoplasmic reticulum, nucleus	73.63	72.67
CDY20643	Canola	cytosol	50.44	72.51
AT1G10290.1	Thale cress	cytosol	72.09	71.77
AT1G59610.1	Thale cress	cytosol	72.53	71.74
CDY45889	Canola	cytosol	72.09	71.3
CDX93442	Canola	cytosol	71.21	71.13
CDY34897	Canola	cytosol	71.43	71.04
Bra031707.1-P	Field mustard	cytosol	71.43	71.04
CDY04455	Canola	cytosol	71.54	70.92
Bra018449.1-P	Field mustard	cytosol	70.99	70.76
CDY27283	Canola	cytosol	58.79	70.12
CDX94909	Canola	mitochondrion	55.38	69.33
Bra017901.1-P	Field mustard	cytosol	71.98	69.31
Bra019950.1-P	Field mustard	cytosol	71.21	69.01
CDY44550	Canola	cytosol	71.98	67.95
VIT_15s0107g00170.t01	Wine grape	cytosol	17.47	67.66
Bra035433.1-P	Field mustard	cytosol	71.76	65.23
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	17.8	61.13
VIT_00s0267g00020.t01	Wine grape	cytosol	10.44	60.51
TraesCS1A01G213900.2	Wheat	cytosol	19.89	28.96
TraesCS4A01G266600.1	Wheat	cytosol	19.23	28.69
TraesCS1A01G385400.2	Wheat	cytosol, golgi, nucleus, unclear	18.35	27.42
TraesCS2A01G281000.2	Wheat	cytosol	17.91	21.03
TraesCS3A01G428000.2	Wheat	cytosol, plastid	17.25	19.62
TraesCS4A01G213700.1	Wheat	cytosol	11.21	17.23
TraesCS4A01G086700.1	Wheat	cytosol	11.54	15.81
TraesCS5A01G114600.1	Wheat	cytosol	10.77	12.81
TraesCS3A01G273500.1	Wheat	plastid	11.21	12.48

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:G_DYNAMIN_dom	InterPro:IPR001849	InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase
PFAM:PF00169	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF134	SMART:SM00053	SMART:SM00233	SMART:SM00302	SUPFAM:SSF50729	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS6A01G312300	EnsemblPlants:TraesCS6A01G312300.3	TIGR:cd08771	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:+:549033258..549041577

Molecular Weight (calculated)

99243.8 Da

IEP (calculated)

9.735

GRAVY (calculated)

-0.548

Length

910 amino acids

Sequence
(BLAST)

001: MSSSAMDAIV ELVELSESMR QAASLLADDD PSDDAAPRRP STFLNAVALG NVGSGKSAVL NSLIGHPVLP TGENGATRAP IVVDLQRDPG LSSKSIVLQI
101: DSKSQQVSSS ALRHSLQDRL SKATGPGRSR TDEIYLKLRT STAPPLKLID LPGIDQRVID DSTINEFAGH NDAILIVVIP AMQAPEVASS RALKLARDID
201: PEGTRTIGVL SKIDQAASDA KTVACVQAIL SNKGPRTAAE IEWVALIGQS VAIASAQSGS VGSENSLETA WRAEAESLKS ILTTAPQNKL GRIALVDTIA
301: KQIRKRMKVR LPNLLSGLQG KSQVVKDELA RLGESMVQSP EGTRAVALEL CREFEDKFLA HVTSGEGSGW KIVASFEGKF PDRIKQLPLD RHFDLNNVKR
401: IVLEADGYQP YLISPEKGLK SLIKGVLEMA KEPSRLCVEE VHRVLLDIVN ATANGTPGLG RYPPFKREII TIASNALDTF KSDAKKMVVA LVDMERAFVP
501: PQHFIRLVQR RMERQRREEE VKTKSSKKAQ DAEQAMMNKG SEQAKSSKDK SNQQDKDTKE GPNLQVAGPG GEITAGYLLK KSAKNNEWSK RWFVLNEKSG
601: KLGYTKKQEE RHFRGVIVLE ECNLEEIEEE ELSKTSKDSK KANGAEKGPS LVFKITNRVA YKTVLKAHSA VVLKAESMAD KIEWVKKIKG IIQSKGGSVK
701: SSNTPEGGSM RQSHSDGSLD TMARRPADPE EELRWMSQEV RGYVEAVLNS LAANVPKAIV LCQVEKAKED MLNQLYSSIS SQSNARIEEL LQEDHNAKRR
801: REKAQKQSTL LSKLTRQLSV HDNRAAVASY SDDTSGPESG PQSPSQSGED WRSAFSAAAN GSADRSSSQN ESRSRSADSR GRRYENGDAN GANSGSRRTP
901: NRLPPAPPKY

Best Arabidopsis Sequence Match ( AT1G10290.1 )
(BLAST)

001: MEAIDELSQL SDSMKQAASL LADEDPDETS SSKRPATFLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIEL SRESSLSSKA IILQIDNKSQ
101: QVSASALRHS LQDRLSKGAS GKNRDEINLK LRTSTAPPLK LVDLPGLDQR IVDESMIAEY AQHNDAILLV IVPASQASEI SSSRALKIAK EYDPESTRTI
201: GIIGKIDQAA ENSKALAAVQ ALLSNQGPPK TTDIPWVAVI GQSVSIASAQ SGSGENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPSVLSGLQ GKSQIVQDEL ARLGEQLVNS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKQLPL DRHFDLNNVK RVVLEADGYQ
401: PYLISPEKGL RSLIKIVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLSR ATSPQPDGPT AGGSLKSMKD KPSPQDKETP EVSGLKTAGP EGEITAGYLM KKSAKTNGWS RRWFVLNEKT
601: GKLGYTKKQE ERNFRGTITL EECTIEEIPE DEVEKSKSSK DKKANGPDSK GPGLVFKITC KVPYKTVLKA HNALVLKAES VVDKNEWINK LQKVIQARGG
701: QVGSVSMRQS LSEGSLDKMV RKPIDPEEEL RWMSQEVRGY VEAVLNSLAA NVPKAVVLCQ VEKAKEDMLN QLYSSISAIG NERIESLIQE DQNVKRRRER
801: YQKQSSLLSK LTRQLSIHDN RAAAASSYSD NSGTESSPRA SGGSSGDDWM NAFNSAANGP SDSLSKYGSG GHSRRYSDPA QNGDAASPGS GSNRRTTPNR
901: LPPAPPPTGS AYRY

Arabidopsis Description

DRP2ADRP2A [Source:UniProtKB/TrEMBL;Acc:A0A178WBB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.