Factsheet for TraesCS4B01G047700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G014200.1
TraesCS2B01G003600.1
TraesCS2D01G014900.1
TraesCS4A01G113900.1
TraesCS4B01G190200.1
TraesCS4D01G191600.1
TraesCS7D01G441700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	TraesCS4A01G113900.1	AT1G13520.1	21798944
AT1G14830.1	TraesCS4B01G190200.1	AT1G13520.1	21798944
AT1G14830.1	TraesCS4D01G191600.1	AT1G13520.1	21798944
AT1G14830.1	TraesCS7D01G441700.1	AT1G13520.1	21798944
AT1G14830.1	TraesCS2A01G014200.1	AT5G57460.1	24529374
AT1G14830.1	TraesCS2B01G003600.1	AT5G57460.1	24529374
AT1G14830.1	TraesCS2D01G014900.1	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G266600.1	Wheat	cytosol	100.0	100.0
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	100.0	100.0
Os03t0713100-01	Rice	plasma membrane	95.57	95.42
HORVU4Hr1G007880.11	Barley	cytosol	97.05	93.23
Zm00001d013426_P002	Maize	plasma membrane	92.95	92.8
KXG37727	Sorghum	cytosol, mitochondrion	92.95	92.65
Zm00001d033751_P003	Maize	plasma membrane	92.79	92.64
GSMUA_Achr2P21630_001	Banana	cytosol	85.41	85.55
GSMUA_Achr7P11190_001	Banana	cytosol	85.41	85.13
KRH60421	Soybean	endoplasmic reticulum	82.46	81.52
KRH41722	Soybean	endoplasmic reticulum, nucleus	82.3	81.36
AT1G14830.1	Thale cress	cytosol	81.8	81.27
CDY33737	Canola	cytosol	81.64	81.11
CDX81675	Canola	cytosol	81.64	81.11
Bra026801.1-P	Field mustard	cytosol	81.64	81.11
CDX84001	Canola	cytosol	81.15	80.62
VIT_01s0011g05800.t01	Wine grape	cytosol	80.98	80.59
Bra016679.1-P	Field mustard	cytosol	80.98	80.46
CDY52026	Canola	cytosol	80.98	80.46
KRH49665	Soybean	endoplasmic reticulum	80.33	79.29
Solyc01g005310.2.1	Tomato	plastid	80.66	79.1
KRH70357	Soybean	endoplasmic reticulum, nucleus	80.0	78.96
TraesCS1B01G227700.1	Wheat	cytosol	77.87	76.0
PGSC0003DMT400051417	Potato	cytosol	68.52	75.59
TraesCS1B01G411700.3	Wheat	cytosol	67.7	67.82
TraesCS6B01G443600.1	Wheat	cytosol	36.39	42.45
TraesCS2B01G298400.1	Wheat	cytosol	34.1	26.67
TraesCS3B01G465100.3	Wheat	cytosol, plastid	34.75	26.37
TraesCS4B01G217700.1	Wheat	cytosol	25.74	24.61
TraesCS7B01G104500.1	Wheat	golgi, unclear	29.18	19.71
TraesCS6B01G342500.2	Wheat	cytosol	28.36	18.74
TraesCS5B01G120600.1	Wheat	cytosol	20.66	16.3
TraesCS3B01G307100.1	Wheat	plastid	20.66	15.42

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF
InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0005938	GO:GO:0007005	GO:GO:0007275
GO:GO:0008150	GO:GO:0009504	GO:GO:0009506	GO:GO:0009987	GO:GO:0010152	GO:GO:0016020
GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase
PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388
PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF80	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS4B01G047700	EnsemblPlants:TraesCS4B01G047700.1	TIGR:cd08771	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:35506412..35514925

Molecular Weight (calculated)

67648.2 Da

IEP (calculated)

8.523

GRAVY (calculated)

-0.337

Length

610 amino acids

Sequence
(BLAST)

001: MATMGSLIGL VNRIQQACTV LGDHGGGAGG SLWEALPSVA VVGGQSSGKS SVLESIVGRD FLPRGSGIVT RRPLVLQLHK TEGGQEYAEF LHAPRKRFSD
101: FAAVRKEIAD ETDRMTGKSK AISNVPIHLS IYSPHVVNLT LIDLPGLTKV AVEGQPESIV QDIENMVRTY VDKPNSIILA ISPANQDIAT SDAIKLAKEV
201: DPTGERTFGV VTKLDLMDKG TNAIDVLEGR SYRLQHPWVG IVNRSQADIN KNVDMLAARR KEQEYFQSSP DYGHLAHKMG AEYLAKLLSQ HLEAVIKAKI
301: PSIISMINKT VDEIEAELDR LGRPIGGDAG AQLYTILDMC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDK HLSLQNVRKV ISEADGYQPH
401: LIAPEQGYRR LIDSSLSYFR GPAEASVDAV HLVLKELVRR SIAATEELKR FPTLQSDIAA AANESLERFR EDGRKTVIRL VDMEASYLTV EFFRKLPTEP
501: DKGANNNTPA NDRYQDNHLR RIGSNVSSYI NMVCDTLRNT IPKAVVHCQV KEAKRNLLNR FYAHVGSKEK KQLSAMLDED PALMEKRDSL VKKLELYKSA
601: RNEIDSVAWK

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.