CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX88623
CDY07049
CDY07629
CDY11868
CDY20508
CDY21099
CDY21100
CDY25907
CDY38299
CDY50165
CDY50167
CDY60337
CDY61712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	CDY21099	AT1G13520.1	21798944
AT1G14830.1	CDY21100	AT1G13520.1	21798944
AT1G14830.1	CDY50165	AT1G13520.1	21798944
AT1G14830.1	CDY50167	AT1G13520.1	21798944
AT1G14830.1	CDY07049	AT2G40060.1	18502847
AT1G14830.1	CDY07629	AT2G40060.1	18502847
AT1G14830.1	CDY20508	AT2G40060.1	18502847
AT1G14830.1	CDY60337	AT2G40060.1	18502847
AT1G14830.1	CDY61712	AT2G40060.1	18502847
AT1G14830.1	CDX88623	AT5G57460.1	24529374
AT1G14830.1	CDY11868	AT5G57460.1	24529374
AT1G14830.1	CDY25907	AT5G57460.1	24529374
AT1G14830.1	CDY38299	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84001	Canola	cytosol	99.84	99.84
Bra016679.1-P	Field mustard	cytosol	99.67	99.67
AT1G14830.1	Thale cress	cytosol	97.39	97.39
CDX81675	Canola	cytosol	97.39	97.39
CDY33737	Canola	cytosol	97.39	97.39
KRH60421	Soybean	endoplasmic reticulum	86.97	86.55
KRH41722	Soybean	endoplasmic reticulum, nucleus	86.97	86.55
GSMUA_Achr2P21630_001	Banana	cytosol	84.04	84.73
VIT_01s0011g05800.t01	Wine grape	cytosol	84.36	84.5
KRH70357	Soybean	endoplasmic reticulum, nucleus	84.2	83.66
KRH49665	Soybean	endoplasmic reticulum	83.88	83.33
GSMUA_Achr7P11190_001	Banana	cytosol	82.74	83.01
Zm00001d013426_P002	Maize	plasma membrane	81.92	82.32
Solyc01g005310.2.1	Tomato	plastid	83.39	82.32
Zm00001d033751_P003	Maize	plasma membrane	81.43	81.83
KXG37727	Sorghum	cytosol, mitochondrion	81.43	81.7
Os03t0713100-01	Rice	plasma membrane	80.62	81.01
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	80.46	80.98
TraesCS4B01G047700.1	Wheat	cytosol	80.46	80.98
TraesCS4A01G266600.1	Wheat	cytosol	80.46	80.98
PGSC0003DMT400051417	Potato	cytosol	71.66	79.57
CDY41188	Canola	cytosol	77.52	76.16
CDX71832	Canola	cytosol	77.2	75.84
CDX89053	Canola	cytosol	77.2	75.72
HORVU4Hr1G007880.11	Barley	cytosol	78.18	75.59
CDY42672	Canola	cytosol	76.87	75.52
CDY23444	Canola	cytosol	72.31	71.84
CDY30477	Canola	cytosol	72.31	71.84
CDX67862	Canola	cytosol	66.78	67.21
CDX67529	Canola	cytosol	66.45	66.89
CDY25074	Canola	cytosol	66.45	66.89
CDY13364	Canola	cytosol	66.29	66.72
CDX99702	Canola	cytosol	65.96	66.39
CDY27661	Canola	cytosol	65.96	66.39
CDY35022	Canola	cytosol	23.94	51.22
CDY35023	Canola	cytosol	27.69	48.99
CDX94910	Canola	cytosol	21.82	28.21
CDY47217	Canola	cytosol	22.48	26.85
CDY53048	Canola	cytosol	21.82	26.8
CDY28314	Canola	cytosol	35.02	26.67
CDY46101	Canola	cytosol	34.85	26.65
CDY48440	Canola	cytosol	34.69	26.39
CDX68994	Canola	cytosol	34.69	26.2
CDX72418	Canola	cytosol	34.85	25.75
CDY47216	Canola	cytosol	22.48	25.65
CDX75370	Canola	cytosol	34.85	25.48
CDY36456	Canola	cytosol	7.65	25.27
CDY34120	Canola	cytosol	26.06	24.46
CDY24536	Canola	cytosol	25.9	24.31
CDY31035	Canola	cytosol	24.43	23.96
CDY23281	Canola	cytosol	15.15	23.48
CDY02039	Canola	cytosol, plastid	21.34	23.43
CDY20643	Canola	cytosol	24.1	23.38
CDY53046	Canola	cytosol	25.41	23.15
CDY03289	Canola	cytosol	18.57	21.59
CDY34117	Canola	cytosol	18.57	21.59
CDY29721	Canola	cytosol	5.21	20.65
CDX93442	Canola	cytosol	28.66	19.32
CDY34897	Canola	cytosol	28.5	19.13
CDY04455	Canola	cytosol	27.85	18.63
CDY45889	Canola	cytosol	27.85	18.59
CDY27283	Canola	cytosol	22.64	18.22
CDY44550	Canola	cytosol	27.85	17.74
CDX94909	Canola	mitochondrion	20.03	16.92
CDY33414	Canola	cytosol	19.87	15.7
CDY42203	Canola	cytosol	19.87	15.52
CDY53047	Canola	cytosol	2.44	15.46
CDY25877	Canola	plastid	19.06	14.22
CDY24530	Canola	cytosol, nucleus, plasma membrane	12.05	11.67
CDY50514	Canola	plastid	14.5	11.62
CDY29720	Canola	cytosol, extracellular	4.89	7.01

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	GO:A0A078IQ38	UniProt:A0A078IQ38	EnsemblPlants:CDY52026
ProteinID:CDY52026	ProteinID:CDY52026.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central
InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00004731001	InterPro:G_DYNAMIN_dom	InterPro:IPR020850
InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195
ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF80	SMART:SM00053
SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI0004EE9C63	SEG:seg	:	:

Description

BnaA08g31390DBnaA08g31390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ38]

Coordinates

chrLK033048:+:30818..34795

Molecular Weight (calculated)

68859.7 Da

IEP (calculated)

8.132

GRAVY (calculated)

-0.373

Length

614 amino acids

Sequence
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT DEGTTEYAEF LHAPRKKFTD
101: FAAVRKEIED ETDRITGKSK QISNKPIQLS IYSPNVVNLT LIDLPGLTKV AVEGQPDSIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEREYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTRNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNQRNA PPPNADIHSD NHFRKIGSNV SAYINMVCDT LRISLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGGM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.