Factsheet for Os03t0713100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 19502382
nucleus: 19621931
plastid: 21433289
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0243900-01
Os08t0412700-01
Os08t0412800-01
Os08t0413100-00
Os08t0413200-00
Os08t0413500-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	Os08t0412700-01	AT1G13520.1	21798944
AT1G14830.1	Os08t0412800-01	AT1G13520.1	21798944
AT1G14830.1	Os08t0413100-00	AT1G13520.1	21798944
AT1G14830.1	Os08t0413200-00	AT1G13520.1	21798944
AT1G14830.1	Os08t0413500-00	AT1G13520.1	21798944
AT1G14830.1	Os08t0243900-01	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013426_P002	Maize	plasma membrane	95.74	95.74
KXG37727	Sorghum	cytosol, mitochondrion	95.74	95.59
TraesCS4A01G266600.1	Wheat	cytosol	95.42	95.57
TraesCS4B01G047700.1	Wheat	cytosol	95.42	95.57
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	95.42	95.57
Zm00001d033751_P003	Maize	plasma membrane	95.25	95.25
HORVU4Hr1G007880.11	Barley	cytosol	93.45	89.92
GSMUA_Achr2P21630_001	Banana	cytosol	85.43	85.71
GSMUA_Achr7P11190_001	Banana	cytosol	85.6	85.46
KRH60421	Soybean	endoplasmic reticulum	84.62	83.79
KRH41722	Soybean	endoplasmic reticulum, nucleus	84.45	83.63
VIT_01s0011g05800.t01	Wine grape	cytosol	82.49	82.22
AT1G14830.1	Thale cress	cytosol	81.67	81.27
CDY33737	Canola	cytosol	81.34	80.94
CDX81675	Canola	cytosol	81.34	80.94
Bra026801.1-P	Field mustard	cytosol	81.34	80.94
CDX84001	Canola	cytosol	81.18	80.78
Bra016679.1-P	Field mustard	cytosol	81.01	80.62
CDY52026	Canola	cytosol	81.01	80.62
KRH49665	Soybean	endoplasmic reticulum	81.34	80.42
KRH70357	Soybean	endoplasmic reticulum, nucleus	81.34	80.42
Solyc01g005310.2.1	Tomato	plastid	81.51	80.06
Os10t0567800-01	Rice	plasma membrane	80.03	79.13
PGSC0003DMT400051417	Potato	cytosol	69.23	76.49
Os09t0572900-01	Rice	cytosol, plasma membrane	75.78	73.96
Os01t0681100-01	Rice	cytosol, plasma membrane	21.28	70.65
Os05t0556100-01	Rice	plasma membrane	67.76	67.98
Os01t0920400-01	Rice	nucleus, plastid	35.35	26.41
Os04t0381000-01	Rice	cytosol	34.7	26.11
Os04t0129900-01	Rice	cytosol	26.84	23.98
Os03t0260000-01	Rice	cytosol	26.35	23.75
Os08t0425100-01	Rice	plasma membrane	24.22	19.32
Os12t0178700-01	Rice	cytosol	17.18	18.78
Os02t0738900-01	Rice	plasma membrane	27.82	18.42
Os06t0247800-01	Rice	plasma membrane	27.17	18.22
Os01t0748000-00	Rice	plastid	21.44	15.94

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	EntrezGene:4333899	ProteinID:AAL58207.1	ProteinID:ABF98531.1
EMBL:AK243639	ProteinID:BAS86056.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central
ProteinID:EEE59808.1	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0005938	GO:GO:0007005
GO:GO:0007275	GO:GO:0008017	GO:GO:0008150	GO:GO:0009504	GO:GO:0009506	GO:GO:0009987
GO:GO:0010152	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850
InterPro:IPR030381	EnsemblPlantsGene:Os03g0713100	EnsemblPlants:Os03t0713100-01	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031
PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF80	UniProt:Q8W315	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI000009E6C5
RefSeq:XP_015630642.1	SEG:seg	:	:	:	:

Description

Similar to dynamin-related protein 1C. (Os03t0713100-01)

Coordinates

chr3:+:28846846..28852545

Molecular Weight (calculated)

68034.7 Da

IEP (calculated)

8.528

GRAVY (calculated)

-0.355

Length

611 amino acids

Sequence
(BLAST)

001: MATMGSLIGL VNRIQRACTV LGDHGGGGEG GSLWEALPSV AVVGGQSSGK SSVLESIVGR DFLPRGSGIV TRRPLVLQLH KTEGGQEYAE FLHAPRKRFT
101: DFAAVRKEIA DETDRITGKT KAISNIPIHL SIYSPHVVNL TLIDLPGLTK VAVEGQQESI VQDIENMVRS YVDKPNSIIL AISPANQDIA TSDAIKLARD
201: VDPSGDRTFG VLTKLDLMDK GTNAVDVLEG RQYRLQHPWV GIVNRSQADI NRNVDMLAAR RKEKEYFESS PDYGHLAHKM GAEYLAKLLS QHLEAVIRAK
301: IPSIIAMINK TIDEIEAELD RLGRPIGGDA GAQLYTILDM CRAFDRVFKE HLDGGRPGGD RIYGVFDHQL PAALKKLPFD KHLSLQNVRK VISEADGYQP
401: HLIAPEQGYR RLIDSSLHYF RGPAEASVDA VHLVLKELVR RSIAATEELK RFPTLQTDIA AAANESLERF REDGRKTVIR LVEMEASYLT VEFFRKLPTE
501: PDKGANNNTP ANDRYQDNHL RRIGSNVSSY INMVCETLRN TIPKAVVHCQ VKEAKRNLLN RFYAHVGSKE KKQLSAMLDE DPALMEKRDS LVKRLELYKS
601: ARNEIDSVAW K

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.