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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 4
  • extracellular 1
  • cytosol 2
  • plasma membrane 1
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
EpiLoc:extracellular
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plastid
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0232400-01
Os02t0758000-01
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13520.1 Os02t0232400-01 AT2G42790.1 21798944
AT1G13520.1 Os02t0758000-01 AT4G25200.1 21798944
AT1G13520.1 Os06t0219500-00 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os08t0412700-01 Rice cytosol, plasma membrane 56.62 57.67
GSMUA_Achr5P27360_001 Banana mitochondrion 41.56 41.67
GSMUA_Achr5P27350_001 Banana mitochondrion 41.3 40.98
GSMUA_Achr3P06220_001 Banana cytosol 38.96 39.16
GSMUA_Achr9P18410_001 Banana cytosol 37.66 37.96
Os08t0413100-00 Rice cytosol, plasma membrane 39.74 36.87
Os08t0413200-00 Rice cytosol 40.0 36.58
VIT_01s0011g02320.t01 Wine grape cytosol 36.1 35.55
Os08t0413500-00 Rice cytosol, plasma membrane 37.14 35.14
Bra026901.1-P Field mustard cytosol 34.29 34.74
Solyc05g010460.2.1 Tomato cytosol, nucleus, peroxisome 35.32 34.26
CDY26654 Canola cytosol 33.77 34.21
Solyc05g010470.2.1 Tomato cytosol 28.05 34.18
CDX98103 Canola cytosol 32.73 34.05
CDY16094 Canola cytosol 33.51 33.95
PGSC0003DMT400019462 Potato cytosol 34.29 33.42
VIT_01s0011g02330.t01 Wine grape cytosol, mitochondrion 34.03 33.16
CDY50165 Canola cytosol 32.73 32.9
AT1G13510.1 Thale cress cytosol 32.47 32.89
CDY26653 Canola cytosol 30.39 32.87
PGSC0003DMT400019458 Potato cytosol 28.83 32.84
Bra019719.1-P Field mustard cytosol 32.47 32.81
CDY30029 Canola cytosol 32.47 32.81
AT1G13470.1 Thale cress cytosol 32.21 32.72
Bra016728.1-P Field mustard cytosol 32.73 32.64
Bra026902.1-P Field mustard cytosol 32.21 32.63
AT1G13530.1 Thale cress cytosol 32.47 32.47
AT1G13540.1 Thale cress cytosol 31.95 32.28
AT1G13490.2 Thale cress cytosol 31.95 32.2
KRH71102 Soybean cytosol 31.95 32.2
CDY21100 Canola cytosol 32.21 32.12
CDY16092 Canola cytosol 23.64 32.04
CDY50167 Canola cytosol 32.21 32.04
AT1G13500.1 Thale cress cytosol 31.95 31.87
AT1G13520.1 Thale cress cytosol 31.95 31.78
CDY21099 Canola cytosol 31.69 31.77
CDY50164 Canola cytosol 31.95 31.7
AT1G13480.1 Thale cress nucleus 31.43 31.27
CDY21101 Canola cytosol, mitochondrion 31.17 30.93
KRH71091 Soybean cytosol 31.69 30.81
KRG93807 Soybean mitochondrion, nucleus 32.21 30.54
PGSC0003DMT400059315 Potato cytosol 22.08 30.47
Bra016727.1-P Field mustard cytosol 30.65 30.41
AT1G13550.1 Thale cress cytosol 29.87 29.64
CDY47587 Canola nucleus 13.77 28.96
Solyc02g089650.2.1 Tomato mitochondrion 29.61 28.64
PGSC0003DMT400026205 Potato mitochondrion 29.09 28.14
CDY48822 Canola cytosol 15.32 28.1
CDY15029 Canola cytosol, mitochondrion 30.39 27.59
CDY26655 Canola cytosol 28.05 27.55
Bra026900.1-P Field mustard cytosol 28.05 27.55
CDY16095 Canola cytosol 27.53 26.97
AT1G61600.1 Thale cress cytosol 29.35 26.84
CDY16093 Canola cytosol 23.9 26.74
KRH63067 Soybean cytosol, golgi, mitochondrion, nucleus 22.6 25.82
CDY26357 Canola mitochondrion 29.87 24.42
Bra038594.1-P Field mustard nucleus 29.61 24.2
Protein Annotations
EMBL:AK108716EnsemblPlants:Os08t0412800-01EnsemblPlantsGene:Os08g0412800EntrezGene:4345562GO:GO:0003674GO:GO:0005488
GO:GO:0046872InterPro:DUF1262PANTHER:PTHR31050PANTHER:PTHR31050:SF0PFAM:PF06880ProteinID:BAC99697.1
ProteinID:BAF23711.1ProteinID:BAT05415.1RefSeq:XP_015648959.1SEG:segUniParc:UPI00001D8DC2UniProt:Q6Z563
MapMan:35.2:::::
Description
Protein of unknown function DUF1262 family protein. (Os08t0412800-01)
Coordinates
chr8:-:19747442..19748835
Molecular Weight (calculated)
41415.8 Da
IEP (calculated)
8.728
GRAVY (calculated)
-0.294
Length
385 amino acids
Sequence
(BLAST)
001: MYATKPLSAF AGHPDATSRP LPPAAAEGGC SGYLAVKSDE EGTDETRCWG LRSQPRVRGL PFPQNRVVTV SDPALGKYAD AYADAVVFVP VPGAPPSSNR
101: YYAVLAAGKH RGLVRACSRE DDAATHCFCR CVRDAKPRPF DPADVYQQME IVPNRGGFTA RSVAADGLPY FLYRSKRWLA YASRPKHFDL AEALGLNDPL
201: RSRSLTTPPP ATATATAATA VAVGRWYTPF FYIKEDGVPL KAQMDRSTFY EIVLEQRWDE AMGGEASKRV LVGGSVEGKQ EAVGAAASAR TGGGSGDGYV
301: WFSAATTTWP AGQRVGVHAS LWEKMVWEEQ RGGWVADEEV GGGGVRKTMS GGAGGRSVLV ERFAVRRLDG SVVVAFDFSH VNKIN
Best Arabidopsis Sequence Match ( AT1G13480.1 )
(BLAST)
001: MYVTRRLSEY QKKPSELKLL PPEGPNSGIM VIQDEESQAT CCFGSCYEGR LKGLPFPQNV KLNAAYTSGG GEHQTTHLTP VVFIPVLDQP LSSNLYYVLQ
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD
Arabidopsis Description
At1g13480 [Source:UniProtKB/TrEMBL;Acc:Q56Y29]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.