CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50164	Canola	cytosol	97.16	97.16
Bra016727.1-P	Field mustard	cytosol	96.39	96.39
AT1G13540.1	Thale cress	cytosol	76.03	77.43
AT1G13510.1	Thale cress	cytosol	72.94	74.47
CDY26653	Canola	cytosol	58.25	63.48
CDY16094	Canola	cytosol	61.08	62.37
CDY26654	Canola	cytosol	60.82	62.11
CDY21100	Canola	cytosol	60.57	60.88
CDY16092	Canola	cytosol	44.33	60.56
CDY21099	Canola	cytosol	59.02	59.64
CDY50165	Canola	cytosol	57.73	58.49
CDY50167	Canola	cytosol	58.25	58.4
CDY30029	Canola	cytosol	55.67	56.69
CDX98103	Canola	cytosol	53.87	56.49
CDY26655	Canola	cytosol	52.58	52.04
CDY16095	Canola	cytosol	52.58	51.91
CDY16093	Canola	cytosol	39.69	44.77
PGSC0003DMT400019462	Potato	cytosol	45.1	44.3
Solyc05g010470.2.1	Tomato	cytosol	35.82	43.99
VIT_01s0011g02320.t01	Wine grape	cytosol	43.56	43.22
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	44.07	43.07
PGSC0003DMT400019458	Potato	cytosol	37.37	42.9
KRH71102	Soybean	cytosol	41.49	42.15
KRH71091	Soybean	cytosol	42.27	41.41
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	35.57	40.95
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	41.49	40.76
PGSC0003DMT400059315	Potato	cytosol	28.61	39.78
GSMUA_Achr5P27360_001	Banana	mitochondrion	38.14	38.54
GSMUA_Achr5P27350_001	Banana	mitochondrion	37.37	37.37
GSMUA_Achr3P06220_001	Banana	cytosol	36.6	37.08
CDY15029	Canola	cytosol, mitochondrion	38.66	35.38
CDY48822	Canola	cytosol	18.81	34.76
GSMUA_Achr9P18410_001	Banana	cytosol	34.02	34.55
Os08t0413200-00	Rice	cytosol	36.6	33.73
Os08t0412700-01	Rice	cytosol, plasma membrane	32.73	33.6
CDY47587	Canola	nucleus	15.72	33.33
Os08t0413100-00	Rice	cytosol, plasma membrane	35.05	32.77
TraesCS7D01G441700.1	Wheat	cytosol	37.63	32.02
Zm00001d050302_P001	Maize	cytosol, plastid	30.93	32.0
OQU80420	Sorghum	cytosol	30.15	31.54
Os08t0413500-00	Rice	cytosol, plasma membrane	32.99	31.45
CDY26357	Canola	mitochondrion	38.14	31.42
Os08t0412800-01	Rice	plasma membrane	30.93	31.17
EES09009	Sorghum	cytosol	34.79	30.47
TraesCS4B01G190200.1	Wheat	cytosol	30.93	30.3
TraesCS4D01G191600.1	Wheat	cytosol	30.67	30.28
TraesCS4A01G113900.1	Wheat	cytosol	30.15	29.85

Protein Annotations

EnsemblPlants:CDY21101	EnsemblPlantsGene:GSBRNA2T00015279001	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2	PFAM:PF06880
ProteinID:CDY21101	ProteinID:CDY21101.1	SEG:seg	UniParc:UPI0004EDC7D8	UniProt:A0A078G6N3	MapMan:35.2

Description

BnaA08g24240DBnaA08g24240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6N3]

Coordinates

chrLK032115:-:671196..672511

Molecular Weight (calculated)

44638.8 Da

IEP (calculated)

6.432

GRAVY (calculated)

-0.589

Length

388 amino acids

Sequence
(BLAST)

001: MYITRRLSEY RRYPSELTQP PPEGPSSGVL VIHDQHSQIQ STCCFGSCEV VECNHSGLPL TQNLKLAVLF NSGGDDSTND PIVFIPVLDK PLSSNCYYAI
101: RRRGKYSGEA STSAKEEDIV SCCLCLTQVP EAKPKQLDPY DTYQQFEIHQ KKPSSRYYHA TSVAPDGVPP WFLKKKEWTV SYSRSQEFEL RDDGKGLNKE
201: LRSELPALGA SVVVGKWYVP FIFVKEKDAK DQIKRSVYYS LTLEQRWEEV FSHENDKSEN HDVVVDVEVE DEVVKLGGQE ITRGVNENGF VWFGVGDRKI
301: GLRSVVVERM KWEEERFGWR SKGEQERAMV VKRLEEKPKD GSFWKSYHCY VLIESFVLKR MDESLVLTYE FRHADKLKSK WSELVGAT

Best Arabidopsis Sequence Match ( AT1G13540.1 )
(BLAST)

001: MYITRSFSEY RRNPAELTQP PPEGPNSGIL VIQDQHSRTR ATSCFGSWLV VDSSLSGLPL PQNLKLAVTF NIGGDDSTRD PVVFIPVLDK PLSSNCYYAI
101: KRHGKHSGEA SGSAKEDDIV SCCFCSSFVP EAKPKQLDPF DMYQQFKIHQ KEPSSRCYYA TSVAPDGVPP WFLRKKEWTV EYSRFQDFEL RDDAKGLITE
201: LRTELPLLGM STVVGKWYVP FIFVKEREVK DQIKNSMYYS MTLEQRWKEL FSDENDKSEN RDVVVDVEVE TEVVKLEGQM IERGLEANGF VWFGVGDKKI
301: GLGSVVVERM KWEEERFGWT GKGDNERSMT VKRLEKSTDG SLWKHYHCYV LIESFVLKRM DESLVLTYEF THVDKLKTKW D

Arabidopsis Description

At1g13540 [Source:UniProtKB/TrEMBL;Acc:Q6NM24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.