Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plasma membrane

Predictor Summary:
  • nucleus 2
  • mitochondrion 3
  • cytosol 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion, nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0232400-01
Os02t0758000-01
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13520.1 Os02t0232400-01 AT2G42790.1 21798944
AT1G13520.1 Os02t0758000-01 AT4G25200.1 21798944
AT1G13520.1 Os06t0219500-00 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU80420 Sorghum cytosol 73.28 74.66
Zm00001d050302_P001 Maize cytosol, plastid 73.55 74.13
TraesCS4B01G190200.1 Wheat cytosol 67.99 64.9
TraesCS4A01G113900.1 Wheat cytosol 66.93 64.54
TraesCS4D01G191600.1 Wheat cytosol 66.93 64.38
Os08t0412800-01 Rice plasma membrane 57.67 56.62
GSMUA_Achr5P27350_001 Banana mitochondrion 48.41 47.16
GSMUA_Achr5P27360_001 Banana mitochondrion 47.62 46.88
GSMUA_Achr3P06220_001 Banana cytosol 43.12 42.56
GSMUA_Achr9P18410_001 Banana cytosol 40.74 40.31
VIT_01s0011g02320.t01 Wine grape cytosol 38.89 37.6
Solyc05g010460.2.1 Tomato cytosol, nucleus, peroxisome 39.15 37.28
Solyc05g010470.2.1 Tomato cytosol 30.69 36.71
PGSC0003DMT400019458 Potato cytosol 32.8 36.69
Os08t0413200-00 Rice cytosol 40.21 36.1
PGSC0003DMT400019462 Potato cytosol 37.57 35.95
KRH71102 Soybean cytosol 35.98 35.6
Bra026901.1-P Field mustard cytosol 35.71 35.53
Os08t0413100-00 Rice cytosol, plasma membrane 38.89 35.42
CDY26653 Canola cytosol 33.33 35.39
CDY16094 Canola cytosol 35.45 35.26
CDY26654 Canola cytosol 35.45 35.26
Bra016728.1-P Field mustard cytosol 35.45 34.72
CDY21100 Canola cytosol 35.45 34.72
Bra026902.1-P Field mustard cytosol 34.66 34.47
VIT_01s0011g02330.t01 Wine grape cytosol, mitochondrion 35.98 34.43
CDY21099 Canola cytosol 34.92 34.38
CDY50167 Canola cytosol 35.19 34.37
AT1G13510.1 Thale cress cytosol 34.39 34.21
CDY50165 Canola cytosol 34.66 34.2
AT1G13480.1 Thale cress nucleus 34.92 34.11
Os08t0413500-00 Rice cytosol, plasma membrane 36.51 33.91
AT1G13540.1 Thale cress cytosol 33.6 33.33
CDY50164 Canola cytosol 33.86 32.99
CDX98103 Canola cytosol 32.28 32.97
CDY21101 Canola cytosol, mitochondrion 33.6 32.73
AT1G13530.1 Thale cress cytosol 33.33 32.73
AT1G13520.1 Thale cress cytosol 33.33 32.56
Bra019719.1-P Field mustard cytosol 32.8 32.55
CDY16092 Canola cytosol 24.34 32.39
PGSC0003DMT400059315 Potato cytosol 23.81 32.26
Bra016727.1-P Field mustard cytosol 33.07 32.22
AT1G13490.2 Thale cress cytosol 32.54 32.2
AT1G13470.1 Thale cress cytosol 32.01 31.93
KRH71091 Soybean cytosol 33.33 31.82
CDY30029 Canola cytosol 32.01 31.76
Solyc02g089650.2.1 Tomato mitochondrion 33.33 31.66
PGSC0003DMT400026205 Potato mitochondrion 33.07 31.41
AT1G13500.1 Thale cress cytosol 31.75 31.09
AT1G13550.1 Thale cress cytosol 30.95 30.15
KRG93807 Soybean mitochondrion, nucleus 32.28 30.05
CDY16093 Canola cytosol 26.98 29.65
KRH63067 Soybean cytosol, golgi, mitochondrion, nucleus 25.66 28.78
CDY48822 Canola cytosol 15.61 28.1
CDY47587 Canola nucleus 13.49 27.87
CDY15029 Canola cytosol, mitochondrion 31.22 27.83
Bra026900.1-P Field mustard cytosol 28.84 27.81
CDY26655 Canola cytosol 28.84 27.81
AT1G61600.1 Thale cress cytosol 30.42 27.32
CDY16095 Canola cytosol 28.31 27.23
CDY26357 Canola mitochondrion 30.42 24.42
Bra038594.1-P Field mustard nucleus 30.16 24.2
Protein Annotations
EnsemblPlants:Os08t0412700-01EnsemblPlantsGene:Os08g0412700EntrezGene:4345561InterPro:DUF1262PANTHER:PTHR31050PANTHER:PTHR31050:SF0
PFAM:PF06880ProteinID:BAC99696.1ProteinID:BAF23710.1ProteinID:BAT05414.1ProteinID:EEE68674.1RefSeq:XP_015648840.1
SEG:segUniParc:UPI00001D8DC1UniProt:Q6Z564MapMan:35.2::
Description
Protein of unknown function DUF1262 family protein. (Os08t0412700-01)
Coordinates
chr8:+:19745573..19747063
Molecular Weight (calculated)
41550.9 Da
IEP (calculated)
8.001
GRAVY (calculated)
-0.417
Length
378 amino acids
Sequence
(BLAST)
001: MYATKPLSLF KSHPEAATQP PPDGRNSGYF VVKGPDDDGG GGDDETCCWG TCGGSRVRDL PFPQNRVLTV RYTEQHGESS TTYADAVVFV PVPDLPLASN
101: RYYAVVAAGK HKGLVRACSR EEDMTTLCFC RCINDAKPRV FDPADVYQQV EIVQRRRGRF TARSVAADGF PYFLYRKKYW RVYASKPKHF DLGEAPGLNA
201: ALRSRQLALD AFPVTTTAAV GKWYAPFFLV KESGVSPPEQ MDRATFYEVS LEQRWEAAAH GHGDGYAGKL DSKRVLIGGS VEGRQEGGGR HGDDGYVWFR
301: AAAAAGGGGQ RVGLCASLWE RMRWEEYRGG WVDEHEGAGE VAGGGSVLVE RFVVKRMDGS VAVAVDFVHF NKAREKLV
Best Arabidopsis Sequence Match ( AT1G13480.1 )
(BLAST)
001: MYVTRRLSEY QKKPSELKLL PPEGPNSGIM VIQDEESQAT CCFGSCYEGR LKGLPFPQNV KLNAAYTSGG GEHQTTHLTP VVFIPVLDQP LSSNLYYVLQ
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD
Arabidopsis Description
At1g13480 [Source:UniProtKB/TrEMBL;Acc:Q56Y29]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.