Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400012249 | |
| PGSC0003DMT400020128 | |
| PGSC0003DMT400044692 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13520.1 | PGSC0003DMT400020128 | AT2G42790.1 | 21798944 |
| AT1G13520.1 | PGSC0003DMT400044692 | AT2G42790.1 | 21798944 |
| AT1G13520.1 | PGSC0003DMT400012249 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400019462 | Potato | cytosol | 82.8 | 58.48 |
| PGSC0003DMT400019458 | Potato | cytosol | 63.44 | 52.37 |
| CDY16092 | Canola | cytosol | 39.07 | 38.38 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 50.9 | 36.32 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 49.46 | 34.94 |
| KRH71102 | Soybean | cytosol | 46.95 | 34.29 |
| KRH71091 | Soybean | cytosol | 47.31 | 33.33 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 37.63 | 31.16 |
| CDX98103 | Canola | cytosol | 40.14 | 30.27 |
| AT1G13490.2 | Thale cress | cytosol | 40.5 | 29.58 |
| Bra026902.1-P | Field mustard | cytosol | 40.14 | 29.47 |
| AT1G13530.1 | Thale cress | cytosol | 40.5 | 29.35 |
| AT1G13510.1 | Thale cress | cytosol | 39.78 | 29.21 |
| Bra019719.1-P | Field mustard | cytosol | 39.78 | 29.13 |
| CDY30029 | Canola | cytosol | 39.78 | 29.13 |
| CDY50164 | Canola | cytosol | 40.5 | 29.12 |
| CDY26653 | Canola | cytosol | 36.92 | 28.93 |
| Bra016727.1-P | Field mustard | cytosol | 40.14 | 28.87 |
| AT1G13500.1 | Thale cress | cytosol | 39.78 | 28.76 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 39.43 | 28.65 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 39.78 | 28.61 |
| CDY21101 | Canola | cytosol, mitochondrion | 39.78 | 28.61 |
| CDY21100 | Canola | cytosol | 39.43 | 28.5 |
| AT1G13540.1 | Thale cress | cytosol | 38.71 | 28.35 |
| CDY21099 | Canola | cytosol | 38.71 | 28.12 |
| Bra016728.1-P | Field mustard | cytosol | 38.71 | 27.98 |
| AT1G13520.1 | Thale cress | cytosol | 38.35 | 27.65 |
| CDY16094 | Canola | cytosol | 37.63 | 27.63 |
| Bra026901.1-P | Field mustard | cytosol | 37.63 | 27.63 |
| AT1G13470.1 | Thale cress | cytosol | 37.28 | 27.44 |
| CDY50165 | Canola | cytosol | 37.63 | 27.42 |
| CDY26654 | Canola | cytosol | 36.92 | 27.11 |
| AT1G13480.1 | Thale cress | nucleus | 37.28 | 26.87 |
| CDY50167 | Canola | cytosol | 36.92 | 26.61 |
| AT1G13550.1 | Thale cress | cytosol | 36.92 | 26.55 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 36.2 | 26.44 |
| PGSC0003DMT400026205 | Potato | mitochondrion | 37.28 | 26.13 |
| CDY16095 | Canola | cytosol | 35.48 | 25.19 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 34.41 | 25.07 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 36.56 | 25.06 |
| Os08t0413200-00 | Rice | cytosol | 37.28 | 24.7 |
| CDY26655 | Canola | cytosol | 34.41 | 24.49 |
| Bra026900.1-P | Field mustard | cytosol | 34.41 | 24.49 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 36.2 | 24.34 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 32.26 | 23.81 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 31.9 | 23.73 |
| OQU80420 | Sorghum | cytosol | 29.39 | 22.1 |
| Os08t0412800-01 | Rice | plasma membrane | 30.47 | 22.08 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 30.82 | 21.94 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 35.84 | 21.93 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 30.82 | 21.88 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 30.47 | 21.46 |
| EES09009 | Sorghum | cytosol | 33.33 | 20.99 |
| CDY16093 | Canola | cytosol | 21.86 | 17.73 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400059315 | EnsemblPlantsGene:PGSC0003DMG400023046 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | PGSC:PGSC0003DMG400023046 | UniParc:UPI0002948E13 |
| UniProt:M1C436 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023046]
Coordinates
chr5:+:34813640..34814660
Molecular Weight (calculated)
32952.5 Da
IEP (calculated)
8.393
GRAVY (calculated)
-0.516
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNFCFCRCV RDVKTKPLDP EEAYQQFEIC LYNTGCNGRG SFFAKSLTPD GFPPRFLRRR GWHLRAKTPK NCELYDDAQG LNAKLRQQLP DFNFTTSCKS
101: SEVVVVGKWY CPFVFIKDGM VLKKQMERSM FYEMTLEQRW EQFFTCQNDK INVGNSVLVD VALDTEVVLI AGTNKATWDD KNIVEGVIWF RSYDKDGNEV
201: MSLGLRREIV QRMKWEQERG GWKQQGRINQ VEEYRENSSG WRRFSCYVLV EKFVLRTMDI SLVMTYDFKH IDKVKSIWE
101: SEVVVVGKWY CPFVFIKDGM VLKKQMERSM FYEMTLEQRW EQFFTCQNDK INVGNSVLVD VALDTEVVLI AGTNKATWDD KNIVEGVIWF RSYDKDGNEV
201: MSLGLRREIV QRMKWEQERG GWKQQGRINQ VEEYRENSSG WRRFSCYVLV EKFVLRTMDI SLVMTYDFKH IDKVKSIWE
001: MYVTKRLSEY QRNPSELTFL PTEGPNSGVL VIQDEESQPT CCFGKCFGCD LNGLPFPQNT RVTVKYQIGH GDDRIVLLDS VAFIPVLHQP PSSNLYYVIR
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD
Arabidopsis Description
Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13530]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.