Factsheet for PGSC0003DMT400044692

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
vacuole 1
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006527
PGSC0003DMT400016576
PGSC0003DMT400019607
PGSC0003DMT400019675
PGSC0003DMT400020128
PGSC0003DMT400020395
PGSC0003DMT400028999
PGSC0003DMT400029003
PGSC0003DMT400038338
PGSC0003DMT400044692
PGSC0003DMT400046078
PGSC0003DMT400060405
PGSC0003DMT400075400
PGSC0003DMT400076528

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42790.1	PGSC0003DMT400019675	AT1G12920.1	21798944
AT2G42790.1	PGSC0003DMT400020395	AT1G12920.1	21798944
AT2G42790.1	PGSC0003DMT400028999	AT1G12920.1	21798944
AT2G42790.1	PGSC0003DMT400029003	AT1G12920.1	21798944
AT2G42790.1	PGSC0003DMT400060405	AT1G12920.1	21798944
AT2G42790.1	PGSC0003DMT400075400	AT1G76150.1	21798944
AT2G42790.1	PGSC0003DMT400038338	AT2G35500.1	21798944
AT2G42790.1	PGSC0003DMT400006527	AT3G16120.1	21798944
AT2G42790.1	PGSC0003DMT400019607	AT3G16120.1	21798944
AT2G42790.1	PGSC0003DMT400046078	AT3G56900.1	21798944
AT2G42790.1	PGSC0003DMT400020128	AT3G58750.1	21798944
AT2G42790.1	PGSC0003DMT400044692	AT3G58750.1	21798944
AT2G42790.1	PGSC0003DMT400016576	AT5G55190.1	21798944
AT2G42790.1	PGSC0003DMT400076528	AT5G55190.1	21798944
AT3G58740.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT3G58740.1	PGSC0003DMT400044692	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g055840.2.1	Tomato	nucleus, unclear	96.48	96.48
PGSC0003DMT400020128	Potato	plastid	87.08	86.58
CDX79848	Canola	cytosol	37.18	85.97
CDY15651	Canola	nucleus	29.35	84.27
VIT_12s0142g00610.t01	Wine grape	plastid	83.56	83.4
CDX98329	Canola	cytosol, peroxisome, plastid	80.23	80.87
CDY49252	Canola	cytosol	80.04	80.67
Bra004720.1-P	Field mustard	cytosol	80.43	80.59
CDY50821	Canola	cytosol	80.43	80.59
CDX79851	Canola	cytosol	80.43	80.59
Bra007417.1-P	Field mustard	cytosol	79.84	80.47
AT2G42790.1	Thale cress	cytosol	80.04	80.35
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	79.65	80.12
GSMUA_Achr10P...	Banana	mitochondrion	74.56	80.04
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.04	80.04
AT3G58750.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	80.43	79.96
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	79.45	79.92
TraesCS5A01G413300.1	Wheat	mitochondrion	76.91	78.13
TraesCS5D01G422000.1	Wheat	unclear	76.91	78.13
TraesCS5B01G416700.1	Wheat	golgi	76.71	77.93
Os02t0232400-01	Rice	nucleus, plastid	76.13	77.8
EES04804	Sorghum	mitochondrion	76.32	77.23
Zm00001d016248_P001	Maize	mitochondrion	75.93	77.14
HORVU5Hr1G099820.5	Barley	plastid	76.32	76.17
KRH14452	Soybean	nucleus	75.34	75.34
KRH46090	Soybean	endoplasmic reticulum, nucleus	74.76	74.46
KRH73702	Soybean	cytosol, plastid	74.56	74.41
Bra007416.1-P	Field mustard	cytosol	65.36	74.39
KRG98876	Soybean	nucleus, plastid	74.56	74.12
CDY49249	Canola	cytosol	68.1	74.04
CDY00587	Canola	cytosol	66.14	71.91
Bra014554.1-P	Field mustard	cytosol	65.75	71.49
AT3G58740.1	Thale cress	cytosol	66.34	70.62
CDX71926	Canola	cytosol	65.17	69.52
CDX89002	Canola	endoplasmic reticulum, golgi	34.44	62.19
HORVU0Hr1G030280.2	Barley	cytosol	19.18	54.44
CDY49250	Canola	extracellular	8.22	51.85
VIT_06s0080g00770.t01	Wine grape	cytosol	20.35	49.06
CDX71928	Canola	cytosol	67.12	41.48
PGSC0003DMT400074559	Potato	mitochondrion	19.96	21.7

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	EntrezGene:102594559	MapMan:5.7.3.6.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub
InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0046912	InterPro:IPR016142	InterPro:IPR016143	UniProt:M1BGI7	PFAM:PF00285	EnsemblPlantsGene:PGSC0003DMG400017338
PGSC:PGSC0003DMG400017338	EnsemblPlants:PGSC0003DMT400044692	PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739
PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	UniParc:UPI00029687EC	RefSeq:XP_006348933.1	SEG:seg	:

Description

Citrate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400017338]

Coordinates

chr7:-:50924880..50932481

Molecular Weight (calculated)

56075.1 Da

IEP (calculated)

7.663

GRAVY (calculated)

-0.139

Length

511 amino acids

Sequence
(BLAST)

001: MECGNSSAVA RSRLSVITAH LAADSSSSSP VLETSSVSAS TAAVSPPPNL KGTLTIIDER TGKKYQVPVT EEGTVKATDF KKITTGYNDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDAGVLR YRGYPIEELA ERSSFLEVAY LLMYGNLPSE NQLSDWEFAV SHHSAVPQGV LDIIQSMPHD SHPMGVLVCA MSTLSIFHPD
201: ANPALRGQDI YNSKQVRDKQ IVRILGKAPV IAAAAYLRMA GRPPVLPSNN LSYAENFLYM LDSLGNRSYK PNPRLARVVD ILFILHAEHE MNCSTAAACH
301: LASSGVDVYT AIAGAVGALY GPLHGGANEA VLRMLSEIAS IDNIPEFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA EEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV ERKLYPNVDF YSGLIYRAIG FPTEFFPVLF AIPRMAGYLA HWRESLDDPD TKIMRPAQVY TGVWLRHYMP LQDRSPSAET DKFGQVSVSN
501: ATRRRLAGSG D

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.