Factsheet for PGSC0003DMT400020395

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020128
PGSC0003DMT400044692

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	PGSC0003DMT400020128	AT3G58750.1	21798944
AT1G12920.1	PGSC0003DMT400044692	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g010520.1.1	Tomato	nucleus	91.3	98.52
PGSC0003DMT400029003	Potato	cytosol	94.05	94.05
PGSC0003DMT400028999	Potato	cytosol	94.05	94.05
EER93602	Sorghum	cytosol	93.14	93.14
Os03t0702800-01	Rice	cytosol, plasma membrane	92.91	92.91
TraesCS2A01G192900.1	Wheat	cytosol	92.68	92.68
TraesCS2B01G213800.1	Wheat	cytosol	92.45	92.45
Os07t0587400-01	Rice	cytosol	92.22	92.22
EER99630	Sorghum	cytosol	91.99	91.99
VIT_18s0041g00730.t01	Wine grape	cytosol	91.76	91.76
AT3G26618.1	Thale cress	cytosol	90.85	91.26
KRH09439	Soybean	cytosol	91.08	91.08
TraesCS4B01G040900.1	Wheat	cytosol	90.85	90.85
TraesCS4D01G038300.1	Wheat	cytosol	90.85	90.85
AT1G12920.1	Thale cress	cytosol	90.16	90.78
TraesCS4A01G273100.1	Wheat	cytosol	90.62	90.62
VIT_18s0072g01010.t01	Wine grape	cytosol	89.7	89.7
KRH38906	Soybean	endoplasmic reticulum	92.22	89.36
PGSC0003DMT400060405	Potato	cytosol	87.64	87.64
PGSC0003DMT400019675	Potato	cytosol	86.96	86.96
VIT_18s0001g12240.t01	Wine grape	mitochondrion	91.3	85.26
CDY14497	Canola	cytosol	23.8	59.77
HORVU3Hr1G046830.1	Barley	mitochondrion	9.38	50.62

Protein Annotations

EntrezGene:102583208	MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049
InterPro:IPR029064	InterPro:L30e-like	UniProt:M1ADE6	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465
EnsemblPlantsGene:PGSC0003DMG400007882	PGSC:PGSC0003DMG400007882	EnsemblPlants:PGSC0003DMT400020395	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1
InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676
UniParc:UPI0002954D5B	RefSeq:XP_006350063.1	RefSeq:XP_015165353.1	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3
SEG:seg	:	:	:	:	:

Description

Eukaryotic peptide chain release factor subunit 1-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400007882]

Coordinates

chr12:-:1881357..1885258

Molecular Weight (calculated)

49004.3 Da

IEP (calculated)

5.167

GRAVY (calculated)

-0.391

Length

437 amino acids

Sequence
(BLAST)

001: MSDGQESDKN IEIWKIKKLI KALEAARGNG TSMISLIMPP RDQVSRVTKM LGDEFGTASN IKSRVNRQSV LGAITSAQQR LKLYNKVPPN GLVLYTGTIV
101: TDDGKEKKVT IDFEPFKPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FSVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FYINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLQAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKKLIGK YFEEISQDTG
301: KYVFGVDDTL KVLEMGAIET LIVWENLDIM RYVLKNSGSG EIVVRHFNKE QEADQSNFRD PVTNAELEVQ EKLSLLEWFA NEYRKFGCSL EFVTNKSQEG
401: SQFCRGFGGI GGLLRYQLDV RAFDELSDDG EVYEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.