Factsheet for TraesCS4D01G038300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G413300.1
TraesCS5B01G416700.1
TraesCS5D01G422000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	TraesCS5A01G413300.1	AT3G58750.1	21798944
AT1G12920.1	TraesCS5B01G416700.1	AT3G58750.1	21798944
AT1G12920.1	TraesCS5D01G422000.1	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G040900.1	Wheat	cytosol	100.0	100.0
TraesCS4A01G273100.1	Wheat	cytosol	99.77	99.77
HORVU4Hr1G006500.2	Barley	cytosol	98.63	97.51
Zm00001d013481_P001	Maize	cytosol, extracellular	94.51	94.51
EER93602	Sorghum	cytosol	94.28	94.28
Os03t0702800-01	Rice	cytosol, plasma membrane	94.28	94.28
Solyc12g010520.1.1	Tomato	nucleus	84.9	91.6
GSMUA_Achr8P09860_001	Banana	cytosol	64.76	91.59
KRH70101	Soybean	cytosol	91.3	91.3
GSMUA_Achr10P...	Banana	cytosol	59.27	91.2
PGSC0003DMT400020395	Potato	cytosol	90.85	90.85
KRH08442	Soybean	cytosol, nucleus	90.39	90.6
Solyc07g006130.1.1	Tomato	cytosol, nucleus	83.75	90.37
KRH09439	Soybean	cytosol	89.93	89.93
VIT_18s0041g00730.t01	Wine grape	cytosol	89.7	89.7
KRH06769	Soybean	mitochondrion	75.51	89.43
PGSC0003DMT400029003	Potato	cytosol	89.24	89.24
PGSC0003DMT400028999	Potato	cytosol	89.24	89.24
AT3G26618.1	Thale cress	cytosol	88.56	88.97
Bra034244.1-P	Field mustard	cytosol	88.33	88.74
CDY00188	Canola	cytosol	88.33	88.74
CDY56364	Canola	cytosol	88.33	88.74
KRH38906	Soybean	endoplasmic reticulum	91.3	88.47
Bra016748.1-P	Field mustard	cytosol	87.87	88.28
CDY21074	Canola	cytosol	87.87	88.28
VIT_18s0072g01010.t01	Wine grape	cytosol	88.1	88.1
AT1G12920.1	Thale cress	cytosol	87.41	88.02
CDY34600	Canola	cytosol	32.72	85.63
PGSC0003DMT400060405	Potato	cytosol	85.58	85.58
Solyc05g055210.1.1	Tomato	plastid	85.58	85.58
PGSC0003DMT400019675	Potato	cytosol	85.13	85.13
KRG94758	Soybean	cytosol, endoplasmic reticulum	67.51	85.01
Solyc11g006660.1.1	Tomato	nucleus	84.9	84.9
VIT_18s0001g12240.t01	Wine grape	mitochondrion	90.16	84.19
GSMUA_Achr6P09990_001	Banana	cytosol	16.02	83.33
TraesCS3D01G472200.1	Wheat	cytosol	85.81	83.15
CDY19410	Canola	cytosol	29.75	81.25
TraesCS1D01G237100.1	Wheat	cytosol	80.09	79.37
GSMUA_Achr10P...	Banana	cytosol	15.1	74.16
TraesCS3D01G472100.1	Wheat	cytosol	72.77	72.27
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	83.75	66.67

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064
InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481
TIGRFAMs:TIGR03676	EnsemblPlantsGene:TraesCS4D01G038300	EnsemblPlants:TraesCS4D01G038300.1	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:16542922..16544235

Molecular Weight (calculated)

48993.2 Da

IEP (calculated)

5.271

GRAVY (calculated)

-0.421

Length

437 amino acids

Sequence
(BLAST)

001: MSDSHETDKN IEMWKIKKLI KGLESARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNRVPPN GLVLYTGTIV
101: TDDGKEKKVT IDFEPFKPIN ASLYLCDNKF HTEALSELLE SDDKFGFIIM DGNGTLFGTL SGNTREVLHK FSVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVAGLILAGS ADFKTELSQS DMFDQRLQCK ILNVVDVSYG GESGFNQAIE LSAEILANVK FIQEKKLIGK YFEEISQDTG
301: KYVFGVDDTL KALEMGAVET LMVWENLDVN RFVLKHSATG EIIIKHLNKE GEADQSNFRD PSTNAELEVQ EKTSLLEWFA NEYKKFGCTL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDI RSFDDLDDDE GVYEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.