Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12920.1 | GSMUA_Achr10P... | AT3G58750.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P09990_001 | Banana | cytosol | 22.33 | 82.14 |
| GSMUA_Achr6P10000_001 | Banana | cytosol | 69.58 | 75.7 |
| GSMUA_Achr10P... | Banana | cytosol | 68.28 | 75.63 |
| GSMUA_Achr10P... | Banana | cytosol | 21.68 | 75.28 |
| GSMUA_Achr10P... | Banana | cytosol | 67.31 | 73.24 |
| KRH70101 | Soybean | cytosol | 94.17 | 66.59 |
| EER93602 | Sorghum | cytosol | 93.85 | 66.36 |
| Os03t0702800-01 | Rice | cytosol, plasma membrane | 93.85 | 66.36 |
| AT3G26618.1 | Thale cress | cytosol | 93.2 | 66.21 |
| TraesCS2B01G213800.1 | Wheat | cytosol | 93.53 | 66.13 |
| TraesCS2A01G192900.1 | Wheat | cytosol | 93.53 | 66.13 |
| KRH08442 | Soybean | cytosol, nucleus | 93.2 | 66.06 |
| GSMUA_Achr10P... | Banana | cytosol | 21.36 | 66.0 |
| EER99630 | Sorghum | cytosol | 93.2 | 65.9 |
| AT1G12920.1 | Thale cress | cytosol | 92.56 | 65.9 |
| Os07t0587400-01 | Rice | cytosol | 92.56 | 65.45 |
| TraesCS4A01G273100.1 | Wheat | cytosol | 91.59 | 64.76 |
| TraesCS4B01G040900.1 | Wheat | cytosol | 91.59 | 64.76 |
| TraesCS4D01G038300.1 | Wheat | cytosol | 91.59 | 64.76 |
| KRG94758 | Soybean | cytosol, endoplasmic reticulum | 70.55 | 62.82 |
| PGSC0003DMT400019675 | Potato | cytosol | 88.67 | 62.7 |
| PGSC0003DMT400060405 | Potato | cytosol | 88.35 | 62.47 |
| Solyc11g006660.1.1 | Tomato | nucleus | 88.35 | 62.47 |
| Solyc05g055210.1.1 | Tomato | plastid | 88.03 | 62.24 |
| KRH06769 | Soybean | mitochondrion | 72.82 | 60.98 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 98.06 | 55.19 |
| HORVU3Hr1G060530.4 | Barley | cytosol | 18.45 | 23.46 |
| Zm00001d021144_P001 | Maize | cytosol | 12.3 | 21.35 |
Protein Annotations
| Gene3D:3.30.1330.30 | Gene3D:3.30.420.60 | Gene3D:3.30.960.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003747 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006415 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr8G09860_001 | EnsemblPlants:GSMUA_Achr8P09860_001 |
| EnsemblPlants:GSMUA_Achr8T09860_001 | InterPro:IPR024049 | InterPro:IPR029064 | InterPro:L30e-like | UniProt:M0TP39 | PFAM:PF03463 |
| PFAM:PF03464 | PFAM:PF03465 | PANTHER:PTHR10113 | PANTHER:PTHR10113:SF19 | InterPro:Peptide_chain-rel_eRF1/aRF1 | InterPro:Release_factor_eRF1/aRF1_N |
| SMART:SM01194 | SUPFAM:SSF53137 | SUPFAM:SSF55315 | SUPFAM:SSF55481 | TIGRFAMs:TIGR03676 | UniParc:UPI000294A4BF |
| InterPro:eRF1_1_Pelota | InterPro:eRF1_2 | InterPro:eRF1_3 | SEG:seg | : | : |
Description
Eukaryotic peptide chain release factor subunit 1-1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G09860_001]
Coordinates
chr8:-:6993802..6995103
Molecular Weight (calculated)
35055.9 Da
IEP (calculated)
6.541
GRAVY (calculated)
-0.457
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETDKNIEI WKVKKLIRAL EEARGNGTSM ISLIMPPRDQ VSRVTKMLGD EYGTASNIKS RVNRQSVLGA ITSAQQRLKL YNKVPPNGLV LYTGTIVTED
101: GKEKKVTIDF EPFKPINASL YLCDNKFHTE ALNELLESDD KFGFIVMDGN GTLFGTLSGN TREVLHKFTV DLPKKHGRGG QSALRFARLR MEKRHNYVRK
201: TAELATQFFI NPATSQPNDT LKALEMGAVE TLIVWENLDI NRYEKISLLE WFANEYKRFG CTLEFVTNKS QEGSQFCRGF GGIGGILRYQ LDLRAFDELS
301: DEEFEEDSE
101: GKEKKVTIDF EPFKPINASL YLCDNKFHTE ALNELLESDD KFGFIVMDGN GTLFGTLSGN TREVLHKFTV DLPKKHGRGG QSALRFARLR MEKRHNYVRK
201: TAELATQFFI NPATSQPNDT LKALEMGAVE TLIVWENLDI NRYEKISLLE WFANEYKRFG CTLEFVTNKS QEGSQFCRGF GGIGGILRYQ LDLRAFDELS
301: DEEFEEDSE
001: MGDKNDDDKN IEIWKIKKLI KSLEAARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNRVPPN GLVLYTGTIV
101: NEDGKEKKVT IDFEPFRPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FSVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ YYINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLAAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKRLIGK YFEEISQDTG
301: KYVFGVEDTL NALESGAIET LIVWENLDIN RYVMKNSATG ETVIKHLNKE QEANTENFKV ADSDLALDVE EKLSLLEWLA NEYRRFGCAL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDM TAFDSEDGEA LDDDSE
101: NEDGKEKKVT IDFEPFRPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FSVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ YYINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLAAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKRLIGK YFEEISQDTG
301: KYVFGVEDTL NALESGAIET LIVWENLDIN RYVMKNSATG ETVIKHLNKE QEANTENFKV ADSDLALDVE EKLSLLEWLA NEYRRFGCAL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDM TAFDSEDGEA LDDDSE
Arabidopsis Description
ERF1-1ERF1-1 [Source:UniProtKB/TrEMBL;Acc:A0A178UFY7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.