CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH14452
KRH46090
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	KRG98876	AT3G58750.1	21798944
AT1G12920.1	KRH14452	AT3G58750.1	21798944
AT1G12920.1	KRH46090	AT3G58750.1	21798944
AT1G12920.1	KRH73702	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	61.38	75.0
KRH70101	Soybean	cytosol	91.64	72.77
KRH08442	Soybean	cytosol, nucleus	89.63	71.33
KRH06769	Soybean	mitochondrion	75.5	71.0
GSMUA_Achr8P09860_001	Banana	cytosol	62.82	70.55
EER93602	Sorghum	cytosol	87.32	69.34
Os03t0702800-01	Rice	cytosol, plasma membrane	87.32	69.34
AT3G26618.1	Thale cress	cytosol	86.46	68.97
EER99630	Sorghum	cytosol	86.74	68.88
Os07t0587400-01	Rice	cytosol	86.46	68.65
AT1G12920.1	Thale cress	cytosol	85.01	67.97
TraesCS2A01G192900.1	Wheat	cytosol	85.59	67.96
KRH09439	Soybean	cytosol	85.3	67.73
TraesCS2B01G213800.1	Wheat	cytosol	85.3	67.73
TraesCS4A01G273100.1	Wheat	cytosol	85.01	67.51
TraesCS4B01G040900.1	Wheat	cytosol	85.01	67.51
TraesCS4D01G038300.1	Wheat	cytosol	85.01	67.51
PGSC0003DMT400060405	Potato	cytosol	83.86	66.59
Solyc05g055210.1.1	Tomato	plastid	83.86	66.59
PGSC0003DMT400019675	Potato	cytosol	83.57	66.36
Solyc11g006660.1.1	Tomato	nucleus	83.57	66.36
KRH38906	Soybean	endoplasmic reticulum	85.88	66.08
GSMUA_Achr6P09990_001	Banana	cytosol	13.26	54.76
GSMUA_Achr10P...	Banana	cytosol	12.68	49.44
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	77.52	49.0
CDX98026	Canola	cytosol	19.31	47.86
Zm00001d021144_P001	Maize	cytosol	18.16	35.39
HORVU3Hr1G060530.4	Barley	cytosol	24.78	35.39
Bra019799.1-P	Field mustard	cytosol	8.07	27.18

Protein Annotations

Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	MapMan:35.1	EMBL:ACUP02012030	EnsemblPlantsGene:GLYMA_19G107400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
InterPro:IPR024049	InterPro:IPR029064	UniProt:K7MXQ6	EnsemblPlants:KRG94758	ProteinID:KRG94758	ProteinID:KRG94758.1
InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481
UniParc:UPI0002963C1B	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3	:	:

Description

hypothetical protein

Coordinates

chr19:-:35897067..35898369

Molecular Weight (calculated)

38524.0 Da

IEP (calculated)

5.295

GRAVY (calculated)

-0.322

Length

347 amino acids

Sequence
(BLAST)

001: MADGESDKNI EIWKIKKLIR ALESARGNGT SMISLIMPPR DQISHVTKML GDEFGTASNI KSRMARKKKV TIDFEPFKPI NASLYLCDNK FHIEALNELL
101: ESDDKFGFII MDGNDTLFGT LTGNTREVLH KFTVDLPKKH GRGGQSALCF ACLRMEKRHN YVRNTAELAT QFFINPATSQ PNVSGLILAG SVGFKTELSQ
201: SDMFNPRLQA KILNVVDVSY GGENGFNQAI ELSAEMLSNV NTLKALEMGA VGTLIVWENL DINRYVLKNS STGEIVIKHL NKEQEGNQSN FRDSPTSAEL
301: EVQEKMPLSG SQFCRGFGGI GGILCYQLNI RSFDELSDDG EVYEDSD

Best Arabidopsis Sequence Match ( AT1G12920.1 )
(BLAST)

001: MAEEADTNIE IWKIKKLIKG LESARGNGTS MISLIMPPRD QVSRVTKMLG DEYGTASNIK SRVNRQSVLS AITSAQQRLK LYNKVPTNGL VLYTGTIVND
101: DGKEKKVTFD FEPFRPINAS LYLCDNKFHT EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFT VDLPKKHGRG GQSALRFARL RMEKRHNYVR
201: KTAELATQFY INPATSQPNV SGLILAGSAD FKTELSQSEL FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILSNVKFI QEKKLIGKYF EEISQDTGKY
301: VFGVEDTLKA LEMGAIETLI VWENLDINRY ELKNSTTGEM VVKHFGKDQE SDTSNFHDSE TNAELEVQEK MPLLEWFANE YKRFGCTLEF VTNKSQEGSQ
401: FCRGFGGIGG MLRYQLDMRT FDELSDTEVY EDSD

Arabidopsis Description

ERF1-2Eukaryotic peptide chain release factor subunit 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.