CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019799.1-P	Field mustard	cytosol	57.86	78.64
CDY34600	Canola	cytosol	45.0	37.72
CDY19410	Canola	cytosol	37.14	32.5
KRH06769	Soybean	mitochondrion	58.57	22.22
CDY21074	Canola	cytosol	60.0	19.31
KRG94758	Soybean	cytosol, endoplasmic reticulum	47.86	19.31
KRH70101	Soybean	cytosol	59.29	18.99
PGSC0003DMT400019675	Potato	cytosol	58.57	18.76
CDY00188	Canola	cytosol	57.86	18.62
CDY56364	Canola	cytosol	57.86	18.62
KRH08442	Soybean	cytosol, nucleus	57.86	18.58
Solyc11g006660.1.1	Tomato	nucleus	57.86	18.54
Solyc05g055210.1.1	Tomato	plastid	56.43	18.08
PGSC0003DMT400060405	Potato	cytosol	56.43	18.08
GSMUA_Achr10P...	Banana	cytosol	36.43	17.96
CDY14497	Canola	cytosol	22.14	17.82
CDX86338	Canola	cytosol	55.0	17.74
CDX85313	Canola	cytosol	55.0	17.74
CDY35766	Canola	cytosol	51.43	17.22
HORVU3Hr1G060530.4	Barley	cytosol	27.86	16.05
GSMUA_Achr10P...	Banana	cytosol	8.57	13.48
Zm00001d021144_P001	Maize	cytosol	12.86	10.11
CDY45916	Canola	cytosol	12.86	6.92

Protein Annotations

Gene3D:3.30.1330.30	MapMan:35.1	GO:A0A078EA30	EnsemblPlants:CDX98026	ProteinID:CDX98026	ProteinID:CDX98026.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00105392001	InterPro:IPR029064	InterPro:L30e-like	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF14
InterPro:Peptide_chain-rel_eRF1/aRF1	SUPFAM:SSF53137	SUPFAM:SSF55315	UniParc:UPI0004EE6D84	InterPro:eRF1_3	:

Description

BnaA06g07770D

Coordinates

chrLK031902:+:607096..607803

Molecular Weight (calculated)

15327.8 Da

IEP (calculated)

8.495

GRAVY (calculated)

0.113

Length

140 amino acids

Sequence
(BLAST)

001: MVMNTELLPT SRVVSTGTIF GFIVMDGWVN PATSQPNVAG LILGGSAGFK TKLSQSEMFD PPLQAKILNI NTGKYVFGMG AIETLIKALE MGTIETLIVW
101: ENLDINRCKL KNNTIWRSSG EALWERLIKA TSMTQSPTMS

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.