Factsheet for PGSC0003DMT400019675

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020128
PGSC0003DMT400044692

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	PGSC0003DMT400020128	AT3G58750.1	21798944
AT1G12920.1	PGSC0003DMT400044692	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006660.1.1	Tomato	nucleus	99.54	99.54
PGSC0003DMT400060405	Potato	cytosol	96.8	96.8
KRH70101	Soybean	cytosol	90.16	90.16
GSMUA_Achr10P...	Banana	cytosol	58.35	89.79
KRH08442	Soybean	cytosol, nucleus	89.24	89.45
KRH06769	Soybean	mitochondrion	75.29	89.16
GSMUA_Achr8P09860_001	Banana	cytosol	62.7	88.67
Os03t0702800-01	Rice	cytosol, plasma membrane	88.56	88.56
AT3G26618.1	Thale cress	cytosol	87.87	88.28
EER93602	Sorghum	cytosol	87.87	87.87
Os07t0587400-01	Rice	cytosol	87.41	87.41
EER99630	Sorghum	cytosol	86.96	86.96
PGSC0003DMT400020395	Potato	cytosol	86.96	86.96
TraesCS2A01G192900.1	Wheat	cytosol	86.96	86.96
TraesCS2B01G213800.1	Wheat	cytosol	86.73	86.73
AT1G12920.1	Thale cress	cytosol	86.04	86.64
PGSC0003DMT400028999	Potato	cytosol	86.04	86.04
PGSC0003DMT400029003	Potato	cytosol	86.04	86.04
TraesCS4D01G038300.1	Wheat	cytosol	85.13	85.13
TraesCS4B01G040900.1	Wheat	cytosol	85.13	85.13
TraesCS4A01G273100.1	Wheat	cytosol	84.9	84.9
KRG94758	Soybean	cytosol, endoplasmic reticulum	66.36	83.57
GSMUA_Achr6P09990_001	Banana	cytosol	15.56	80.95
GSMUA_Achr10P...	Banana	cytosol	14.65	71.91
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	81.24	64.66
CDX98026	Canola	cytosol	18.76	58.57
HORVU3Hr1G060530.4	Barley	cytosol	28.83	51.85
Zm00001d021144_P001	Maize	cytosol	20.59	50.56
Bra019799.1-P	Field mustard	cytosol	8.01	33.98

Protein Annotations

EntrezGene:102596756	MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049
InterPro:IPR029064	InterPro:L30e-like	UniProt:M1ACF3	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465
EnsemblPlantsGene:PGSC0003DMG401007604	PGSC:PGSC0003DMG401007604	EnsemblPlants:PGSC0003DMT400019675	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1
InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676
UniParc:UPI000294BB1D	RefSeq:XP_006367237.1	RefSeq:XP_006367238.1	RefSeq:XP_015160813.1	RefSeq:XP_015160815.1	InterPro:eRF1_1_Pelota
InterPro:eRF1_2	InterPro:eRF1_3	:	:	:	:

Description

Eukaryotic peptide chain release factor subunit 1-3 [Source:PGSC_GENE;Acc:PGSC0003DMG401007604]

Coordinates

chr11:-:5735002..5739338

Molecular Weight (calculated)

49007.3 Da

IEP (calculated)

5.068

GRAVY (calculated)

-0.416

Length

437 amino acids

Sequence
(BLAST)

001: MADGQENDKN IEIWKMKKLI KALESARGNG TSMISLIIPP GDQISRITKM LAEEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNKVPPN GLVLYTGTIM
101: TEDGKEKKVT FDLTPFKPIN ASLYLCDNKF HTGPLGELLE SDEKFGFIVM DGNGTLFGTL SGNTREILHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLQAK ILNVVDVSYG GENGFSQAIE LSAEILSNVK FIQEKRLIGK FFEEISQDTG
301: KYVFGVDDTI KALEMGAVET LIVWENLDIN RYVLKNSVTN EIVIKHLNKD QEADQSNFKD PENSAELEVQ DKMPLLEWFA NEYKTFGCSL EFVTNRSQEG
401: SQFCRGFGGI GGILRYQLDM RSFDEPSDEG EYFEDSD

Best Arabidopsis Sequence Match ( AT1G12920.1 )
(BLAST)

001: MAEEADTNIE IWKIKKLIKG LESARGNGTS MISLIMPPRD QVSRVTKMLG DEYGTASNIK SRVNRQSVLS AITSAQQRLK LYNKVPTNGL VLYTGTIVND
101: DGKEKKVTFD FEPFRPINAS LYLCDNKFHT EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFT VDLPKKHGRG GQSALRFARL RMEKRHNYVR
201: KTAELATQFY INPATSQPNV SGLILAGSAD FKTELSQSEL FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILSNVKFI QEKKLIGKYF EEISQDTGKY
301: VFGVEDTLKA LEMGAIETLI VWENLDINRY ELKNSTTGEM VVKHFGKDQE SDTSNFHDSE TNAELEVQEK MPLLEWFANE YKRFGCTLEF VTNKSQEGSQ
401: FCRGFGGIGG MLRYQLDMRT FDELSDTEVY EDSD

Arabidopsis Description

ERF1-2Eukaryotic peptide chain release factor subunit 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.