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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • mitochondrion 2
  • peroxisome 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:plastid
EpiLoc:plastid
iPSORT:secretory
MultiLoc:mitochondrion
Plant-mPloc:cytosol, peroxisome
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400006527
PGSC0003DMT400016576
PGSC0003DMT400019607
PGSC0003DMT400019675
PGSC0003DMT400020128
PGSC0003DMT400020395
PGSC0003DMT400028999
PGSC0003DMT400029003
PGSC0003DMT400038338
PGSC0003DMT400044692
PGSC0003DMT400046078
PGSC0003DMT400060405
PGSC0003DMT400075400
PGSC0003DMT400076528

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G42790.1 PGSC0003DMT400019675 AT1G12920.1 21798944
AT2G42790.1 PGSC0003DMT400020395 AT1G12920.1 21798944
AT2G42790.1 PGSC0003DMT400028999 AT1G12920.1 21798944
AT2G42790.1 PGSC0003DMT400029003 AT1G12920.1 21798944
AT2G42790.1 PGSC0003DMT400060405 AT1G12920.1 21798944
AT2G42790.1 PGSC0003DMT400075400 AT1G76150.1 21798944
AT2G42790.1 PGSC0003DMT400038338 AT2G35500.1 21798944
AT2G42790.1 PGSC0003DMT400006527 AT3G16120.1 21798944
AT2G42790.1 PGSC0003DMT400019607 AT3G16120.1 21798944
AT2G42790.1 PGSC0003DMT400046078 AT3G56900.1 21798944
AT2G42790.1 PGSC0003DMT400020128 AT3G58750.1 21798944
AT2G42790.1 PGSC0003DMT400044692 AT3G58750.1 21798944
AT2G42790.1 PGSC0003DMT400016576 AT5G55190.1 21798944
AT2G42790.1 PGSC0003DMT400076528 AT5G55190.1 21798944
AT3G58740.1 PGSC0003DMT400020128 AT2G42790.1 21798944
AT3G58740.1 PGSC0003DMT400044692 AT2G42790.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g011000.1.1 Tomato nucleus 98.44 98.44
CDX79848 Canola cytosol 38.13 88.69
PGSC0003DMT400044692 Potato plastid 86.58 87.08
CDY15651 Canola nucleus 29.96 86.52
VIT_12s0142g00610.t01 Wine grape plastid 84.82 85.16
AT2G42790.1 Thale cress cytosol 81.71 82.51
CDX98329 Canola cytosol, peroxisome, plastid 81.32 82.45
CDY49252 Canola cytosol 81.32 82.45
CDY50821 Canola cytosol 81.71 82.35
CDX67764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 81.32 82.28
Bra007417.1-P Field mustard cytosol 81.13 82.25
Bra004720.1-P Field mustard cytosol 81.52 82.16
CDX79851 Canola cytosol 81.52 82.16
AT3G58750.1 Thale cress endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 82.1 82.1
Bra003355.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 81.13 82.09
CDX71925 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 81.32 81.8
GSMUA_Achr10P... Banana mitochondrion 74.51 80.46
Os02t0232400-01 Rice nucleus, plastid 78.21 80.4
EES04804 Sorghum mitochondrion 78.79 80.2
TraesCS5B01G416700.1 Wheat golgi 78.4 80.12
Zm00001d016248_P001 Maize mitochondrion 78.4 80.12
TraesCS5D01G422000.1 Wheat unclear 78.21 79.92
TraesCS5A01G413300.1 Wheat mitochondrion 78.21 79.92
HORVU5Hr1G099820.5 Barley plastid 77.63 77.93
KRH14452 Soybean nucleus 76.46 76.91
Bra007416.1-P Field mustard cytosol 67.12 76.84
CDY49249 Canola cytosol 70.23 76.81
KRH46090 Soybean endoplasmic reticulum, nucleus 75.49 75.63
KRG98876 Soybean nucleus, plastid 75.49 75.49
KRH73702 Soybean cytosol, plastid 74.9 75.2
CDY00587 Canola cytosol 68.48 74.89
Bra014554.1-P Field mustard cytosol 68.09 74.47
AT3G58740.1 Thale cress cytosol 68.09 72.92
CDX71926 Canola cytosol 65.56 70.35
CDX89002 Canola endoplasmic reticulum, golgi 34.63 62.9
HORVU0Hr1G030280.2 Barley cytosol 19.65 56.11
CDY49250 Canola extracellular 8.37 53.09
VIT_06s0080g00770.t01 Wine grape cytosol 21.21 51.42
CDX71928 Canola cytosol 69.26 43.05
PGSC0003DMT400074559 Potato mitochondrion 20.82 22.77
Protein Annotations
Gene3D:1.10.230.10Gene3D:1.10.580.10EntrezGene:102595659MapMan:5.7.3.6.1InterPro:Citrate_synth-like_lrg_a-subInterPro:Citrate_synth-like_sm_a-sub
InterPro:Citrate_synthaseInterPro:Citrate_synthase_ASInterPro:Citrate_synthase_bac-typInterPro:Citrate_synthase_sfGO:GO:0003674GO:GO:0003824
GO:GO:0006091GO:GO:0006099GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016740
GO:GO:0046912InterPro:IPR016142InterPro:IPR016143UniProt:M1AD15PFAM:PF00285EnsemblPlantsGene:PGSC0003DMG400007797
PGSC:PGSC0003DMG400007797EnsemblPlants:PGSC0003DMT400020128PIRSF:PIRSF001369PRINTS:PR00143ScanProsite:PS00480PANTHER:PTHR11739
PANTHER:PTHR11739:SF4SUPFAM:SSF48256UniParc:UPI000295B057RefSeq:XP_006350017.1SEG:seg:
Description
Citrate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400007797]
Coordinates
chr12:+:1317537..1324924
Molecular Weight (calculated)
56228.7 Da
IEP (calculated)
9.088
GRAVY (calculated)
-0.143
Length
514 amino acids
Sequence
(BLAST)
001: MENGNSSAVA RGRLAVLSAH LAASLNVSDL TTFKLLETSG VSAVSGVAPP PNLKGALTII DERTGKKYPV QVSEDGTIKA TDLKKITTGQ NDKGLKLYDP
101: GYLNTAPVRS SICYIDGDAG ILRYRGYPIE ELAEGSSFLE VAYLLLYGNL PSENQLTDWE FTVSQHSAVP QGLLDIIQSM PHDAHPMGVL VSAMSALSVF
201: HPDANPALRG QDIYKSKQVR DKQIVRILGK APTIATAAYL RMAGRPPVLP SNNLSYAENF LYMLDSLGNR SYKPNPRLAR VLDILFILHA EHEMNCSTAA
301: ARHLASSGVD VYTALAGAVG ALYGPLHGGA NEAVLKMLSE IGSVENIPEF LEGVKNRKRK MSGFGHRVYK NYDPRAKVIK TLADEVFSIV GRDPLIEVAV
401: ALEKAALSDE YFVKRKLYPN VDFYSGLIYR AMGFPTEFFP VLFAIPRMAG YLSHWKESLD DPDTKIMRPA QVYTGVWMRH YMPLKERSPH SEADKLGHVS
501: VSNATKRRLA GSGA
Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)
001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL
Arabidopsis Description
CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.