Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71925 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 92.61 | 93.15 |
| CDY49252 | Canola | cytosol | 91.83 | 93.1 |
| Bra007417.1-P | Field mustard | cytosol | 91.63 | 92.9 |
| CDX98329 | Canola | cytosol, peroxisome, plastid | 90.47 | 91.72 |
| CDX67764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 90.47 | 91.54 |
| Bra003355.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 90.27 | 91.34 |
| AT2G42790.1 | Thale cress | cytosol | 85.21 | 86.05 |
| VIT_12s0142g00610.t01 | Wine grape | plastid | 82.1 | 82.42 |
| PGSC0003DMT400020128 | Potato | plastid | 82.1 | 82.1 |
| Solyc12g011000.1.1 | Tomato | nucleus | 81.91 | 81.91 |
| Solyc07g055840.2.1 | Tomato | nucleus, unclear | 80.54 | 81.02 |
| AT3G58740.1 | Thale cress | cytosol | 75.49 | 80.83 |
| Os02t0232400-01 | Rice | nucleus, plastid | 78.4 | 80.6 |
| PGSC0003DMT400044692 | Potato | plastid | 79.96 | 80.43 |
| Zm00001d016248_P001 | Maize | mitochondrion | 78.02 | 79.72 |
| TraesCS5A01G413300.1 | Wheat | mitochondrion | 77.82 | 79.52 |
| TraesCS5B01G416700.1 | Wheat | golgi | 77.82 | 79.52 |
| TraesCS5D01G422000.1 | Wheat | unclear | 77.63 | 79.32 |
| EES04804 | Sorghum | mitochondrion | 77.82 | 79.21 |
| GSMUA_Achr10P... | Banana | mitochondrion | 72.96 | 78.78 |
| KRH14452 | Soybean | nucleus | 77.24 | 77.69 |
| HORVU5Hr1G099820.5 | Barley | plastid | 76.65 | 76.95 |
| KRH73702 | Soybean | cytosol, plastid | 76.07 | 76.37 |
| KRH46090 | Soybean | endoplasmic reticulum, nucleus | 75.29 | 75.44 |
| KRG98876 | Soybean | nucleus, plastid | 75.29 | 75.29 |
| HORVU0Hr1G030280.2 | Barley | cytosol | 20.23 | 57.78 |
| VIT_06s0080g00770.t01 | Wine grape | cytosol | 21.21 | 51.42 |
| AT3G60100.2 | Thale cress | mitochondrion | 21.6 | 23.67 |
| AT2G44350.2 | Thale cress | mitochondrion | 21.21 | 23.0 |
| AT2G11270.1 | Thale cress | mitochondrion | 3.31 | 20.48 |
Protein Annotations
| Gene3D:1.10.230.10 | Gene3D:1.10.580.10 | MapMan:5.7.3.6.1 | EntrezGene:825044 | UniProt:A0A178VNV2 | ProteinID:AEE79826.1 |
| EMBL:AK220724 | ArrayExpress:AT3G58750 | EnsemblPlantsGene:AT3G58750 | RefSeq:AT3G58750 | TAIR:AT3G58750 | RefSeq:AT3G58750-TAIR-G |
| EnsemblPlants:AT3G58750.1 | TAIR:AT3G58750.1 | EMBL:BT015884 | EMBL:BT020195 | ProteinID:CAB88292.1 | Symbol:CSY2 |
| InterPro:Citrate_synth-like_lrg_a-sub | InterPro:Citrate_synth-like_sm_a-sub | InterPro:Citrate_synthase | InterPro:Citrate_synthase_AS | InterPro:Citrate_synthase_bac-typ | InterPro:Citrate_synthase_sf |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004108 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005777 | GO:GO:0006091 | GO:GO:0006099 | GO:GO:0006629 | GO:GO:0006635 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0046912 | InterPro:IPR016142 | InterPro:IPR016143 | RefSeq:NP_191434.1 | ProteinID:OAP06763.1 | PFAM:PF00285 |
| PIRSF:PIRSF001369 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PRINTS:PR00143 | ScanProsite:PS00480 | PANTHER:PTHR11739 | PANTHER:PTHR11739:SF4 | UniProt:Q9LXS6 | SUPFAM:SSF48256 |
| UniParc:UPI0000048896 | : | : | : | : | : |
Description
CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
Coordinates
chr3:-:21724306..21728137
Molecular Weight (calculated)
56606.1 Da
IEP (calculated)
8.861
GRAVY (calculated)
-0.162
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.