Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • mitochondrion 3
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:cytosol, mitochondrion, nucleus, secretory
MultiLoc:mitochondrion
Predotar:secretory
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 unclear: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G195500.2
TraesCS1B01G110900.1
TraesCS1D01G199100.1
TraesCS1D01G203800.1
TraesCS2A01G192900.1
TraesCS2A01G245600.1
TraesCS2B01G143000.1
TraesCS2B01G213800.1
TraesCS2B01G427400.1
TraesCS3A01G263500.1
TraesCS3A01G305600.1
TraesCS3B01G296700.1
TraesCS3B01G330900.1
TraesCS3D01G263400.1
TraesCS3D01G296300.1
TraesCS4A01G273100.1
TraesCS4A01G427300.1
TraesCS4A01G428300.1
TraesCS4B01G040900.1
TraesCS4D01G038300.1
TraesCS5A01G138500.1
TraesCS5A01G341000.1
TraesCS5A01G413300.1
TraesCS5B01G138600.2
TraesCS5B01G339100.1
TraesCS5B01G340700.1
TraesCS5B01G416700.1
TraesCS5D01G152200.1
TraesCS5D01G346200.2
TraesCS5D01G422000.1
TraesCS7A01G061500.1
TraesCS7A01G284100.1
TraesCS7B01G254000.2
TraesCS7D01G056400.1
TraesCS7D01G155200.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G42790.1 TraesCS2A01G192900.1 AT1G12920.1 21798944
AT2G42790.1 TraesCS2B01G213800.1 AT1G12920.1 21798944
AT2G42790.1 TraesCS4A01G273100.1 AT1G12920.1 21798944
AT2G42790.1 TraesCS4B01G040900.1 AT1G12920.1 21798944
AT2G42790.1 TraesCS4D01G038300.1 AT1G12920.1 21798944
AT2G42790.1 TraesCS5A01G341000.1 AT1G76150.1 21798944
AT2G42790.1 TraesCS5B01G339100.1 AT1G76150.1 21798944
AT2G42790.1 TraesCS5D01G346200.2 AT1G76150.1 21798944
AT2G42790.1 TraesCS1A01G195500.2 AT2G35500.1 21798944
AT2G42790.1 TraesCS1D01G199100.1 AT2G35500.1 21798944
AT2G42790.1 TraesCS1B01G110900.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS1D01G203800.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS2A01G245600.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS2B01G143000.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS2B01G427400.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS3A01G305600.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS3B01G330900.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS3D01G296300.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS4A01G427300.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS4A01G428300.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS5B01G340700.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS7A01G061500.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS7A01G284100.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS7D01G056400.1 AT3G16120.1 21798944
AT2G42790.1 TraesCS5A01G138500.1 AT3G56900.1 21798944
AT2G42790.1 TraesCS5B01G138600.2 AT3G56900.1 21798944
AT2G42790.1 TraesCS5D01G152200.1 AT3G56900.1 21798944
AT2G42790.1 TraesCS5A01G413300.1 AT3G58750.1 21798944
AT2G42790.1 TraesCS5B01G416700.1 AT3G58750.1 21798944
AT2G42790.1 TraesCS5D01G422000.1 AT3G58750.1 21798944
AT2G42790.1 TraesCS7B01G254000.2 AT5G55190.1 21798944
AT2G42790.1 TraesCS7D01G155200.2 AT5G55190.1 21798944
AT3G58740.1 TraesCS5A01G413300.1 AT2G42790.1 21798944
AT3G58740.1 TraesCS5B01G416700.1 AT2G42790.1 21798944
AT3G58740.1 TraesCS5D01G422000.1 AT2G42790.1 21798944
AT3G58750.1 TraesCS3A01G263500.1 AT1G25420.1 21798944
AT3G58750.1 TraesCS3B01G296700.1 AT1G25420.1 21798944
AT3G58750.1 TraesCS3D01G263400.1 AT1G25420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G416700.1 Wheat golgi 98.61 98.61
TraesCS5A01G413300.1 Wheat mitochondrion 98.01 98.01
EES04804 Sorghum mitochondrion 92.84 92.48
Zm00001d016248_P001 Maize mitochondrion 92.45 92.45
HORVU5Hr1G099820.5 Barley plastid 94.04 92.38
Os02t0232400-01 Rice nucleus, plastid 89.26 89.8
CDX79848 Canola cytosol 37.18 84.62
CDY15651 Canola nucleus 29.62 83.71
GSMUA_Achr10P... Banana mitochondrion 76.14 80.46
AT2G42790.1 Thale cress cytosol 80.12 79.17
VIT_12s0142g00610.t01 Wine grape plastid 80.52 79.1
CDX98329 Canola cytosol, peroxisome, plastid 79.52 78.9
CDY50821 Canola cytosol 79.52 78.43
PGSC0003DMT400020128 Potato plastid 79.92 78.21
CDX67764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 78.93 78.15
Bra007417.1-P Field mustard cytosol 78.73 78.11
Bra003355.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 78.73 77.95
CDY49252 Canola cytosol 78.53 77.91
Solyc07g055840.2.1 Tomato nucleus, unclear 79.13 77.89
CDX79851 Canola cytosol 78.73 77.65
Bra004720.1-P Field mustard cytosol 78.73 77.65
AT3G58750.1 Thale cress endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 79.32 77.63
Solyc12g011000.1.1 Tomato nucleus 79.32 77.63
CDX71925 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 78.73 77.5
PGSC0003DMT400044692 Potato plastid 78.13 76.91
KRH14452 Soybean nucleus 76.14 74.95
Bra007416.1-P Field mustard cytosol 66.6 74.61
CDY49249 Canola cytosol 69.38 74.26
KRH73702 Soybean cytosol, plastid 74.75 73.44
KRH46090 Soybean endoplasmic reticulum, nucleus 74.75 73.29
KRG98876 Soybean nucleus, plastid 74.16 72.57
Bra014554.1-P Field mustard cytosol 66.6 71.28
CDY00587 Canola cytosol 66.4 71.06
AT3G58740.1 Thale cress cytosol 67.59 70.83
CDX71926 Canola cytosol 64.41 67.64
CDX89002 Canola endoplasmic reticulum, golgi 34.0 60.42
CDY49250 Canola extracellular 8.95 55.56
VIT_06s0080g00770.t01 Wine grape cytosol 20.68 49.06
CDX71928 Canola cytosol 67.99 41.35
TraesCS6D01G155800.1 Wheat mitochondrion 20.87 21.04
Protein Annotations
Gene3D:1.10.230.10Gene3D:1.10.580.10MapMan:5.7.3.6.1InterPro:Citrate_synth-like_lrg_a-subInterPro:Citrate_synth-like_sm_a-subInterPro:Citrate_synthase
InterPro:Citrate_synthase_ASInterPro:Citrate_synthase_bac-typInterPro:Citrate_synthase_sfGO:GO:0003674GO:GO:0003824GO:GO:0006091
GO:GO:0006099GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016740GO:GO:0046912
InterPro:IPR016142InterPro:IPR016143PFAM:PF00285PIRSF:PIRSF001369PRINTS:PR00143ScanProsite:PS00480
PANTHER:PTHR11739PANTHER:PTHR11739:SF4SUPFAM:SSF48256EnsemblPlantsGene:TraesCS5D01G422000EnsemblPlants:TraesCS5D01G422000.1TIGR:cd06115
SEG:seg:::::
Description
No Description!
Coordinates
chr5D:+:482102598..482107863
Molecular Weight (calculated)
55123.1 Da
IEP (calculated)
9.128
GRAVY (calculated)
-0.186
Length
503 amino acids
Sequence
(BLAST)
001: MDRADPARGR LAVLSSHLLA AGAEPAAALE RSPASAAAPG TRAGVLAVVD SRTGKRYEVK VSEDGTVRAT DFKKITAGKD DKGLKTYDPG YLNTAPVRSS
101: ICYIDGDEGI LRYRGYPIEE VAESSSFVEV AYLLMYGNLP SQSQLAAWEF AISQHSAVPQ GLLDIIQSMP HDAHPMGVLA SAMSTLSVFH PDANPALRGQ
201: DLYNSKQVRD KQIVRVLGKA PAIAAAAYLR LAGRPAVLPS NNLSYSENFL YMLDSLGDKE YKPNPRLARV LDILFILHAE HEMNCSTAAV RHLASSGVDV
301: FTALSGGVGA LYGPLHGGAN EAVLKMLNEI GAVENIPDFI EGVKNRKRKM SGFGHRVYKN YDPRAKVIRK LAEEVFSIVG RDPLIEVAVA LEKAALSDEY
401: FIKRKLYPNV DFYSGLIYRA MGFPTEFFPV LFAIPRMAGW LAHWKESLDD PDNKIMRPQQ VYTGVWLRHY TPVRERVASN QGEELGQIAT SNATRRRRAG
501: SSL
Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)
001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV
Arabidopsis Description
CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.