Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G349900.1 | Wheat | cytosol | 99.1 | 99.55 |
| EER88605 | Sorghum | cytosol | 86.1 | 86.88 |
| Os01t0611100-01 | Rice | plastid | 85.2 | 85.97 |
| Zm00001d044054_P002 | Maize | cytosol | 84.75 | 85.52 |
| Zm00001d011474_P001 | Maize | cytosol, plastid | 84.75 | 85.52 |
| AT5G55190.1 | Thale cress | cytosol | 83.86 | 84.62 |
| VIT_09s0002g05940.t01 | Wine grape | cytosol | 83.86 | 84.62 |
| VIT_04s0008g05020.t01 | Wine grape | cytosol | 83.86 | 84.62 |
| KRH52485 | Soybean | cytosol | 83.41 | 84.16 |
| KRH61811 | Soybean | cytosol | 83.41 | 84.16 |
| KRH61808 | Soybean | nucleus | 83.41 | 84.16 |
| KRH52484 | Soybean | cytosol | 83.41 | 84.16 |
| KRH52483 | Soybean | nucleus | 83.41 | 84.16 |
| AT5G20020.1 | Thale cress | cytosol | 83.41 | 84.16 |
| Bra035562.1-P | Field mustard | cytosol, nucleus, plastid | 82.96 | 83.71 |
| AT5G20010.1 | Thale cress | cytosol | 82.51 | 83.26 |
| Bra002926.1-P | Field mustard | cytosol, nucleus, plastid | 82.51 | 83.26 |
| PGSC0003DMT400016576 | Potato | cytosol | 81.61 | 82.35 |
| Solyc01g104680.2.1 | Tomato | cytosol | 81.61 | 82.35 |
| Solyc01g104700.2.1 | Tomato | cytosol, nucleus | 81.61 | 82.35 |
| Solyc05g023800.2.1 | Tomato | nucleus | 81.61 | 82.35 |
| CDY19907 | Canola | cytosol | 82.51 | 82.14 |
| PGSC0003DMT400076528 | Potato | cytosol | 81.17 | 81.9 |
| KRH56644 | Soybean | cytosol | 79.82 | 80.54 |
| Zm00001d039091_P002 | Maize | cytosol | 85.2 | 80.51 |
| Zm00001d011328_P001 | Maize | cytosol | 46.64 | 80.0 |
| GSMUA_Achr5P09850_001 | Banana | plasma membrane | 85.2 | 77.24 |
| CDX70904 | Canola | extracellular | 81.61 | 76.79 |
| Zm00001d039090_P001 | Maize | cytosol | 85.2 | 75.1 |
| CDY06600 | Canola | cytosol | 82.96 | 74.6 |
| HORVU7Hr1G084420.4 | Barley | cytosol | 95.52 | 73.7 |
| GSMUA_Achr1P11790_001 | Banana | cytosol, golgi | 85.2 | 73.64 |
| GSMUA_Achr6P01500_001 | Banana | vacuole | 82.96 | 73.41 |
| CDY20779 | Canola | vacuole | 83.41 | 73.23 |
| GSMUA_Achr5P06130_001 | Banana | cytosol | 84.75 | 72.14 |
| GSMUA_Achr4P00780_001 | Banana | mitochondrion | 85.2 | 71.97 |
| VIT_11s0016g04780.t01 | Wine grape | plastid | 83.86 | 71.92 |
| CDY17309 | Canola | plastid | 83.41 | 71.81 |
| KXG20307 | Sorghum | cytosol | 34.53 | 70.0 |
| GSMUA_Achr1P05300_001 | Banana | mitochondrion | 84.75 | 67.74 |
| GSMUA_Achr1P14580_001 | Banana | cytosol | 84.75 | 66.55 |
| KRH61809 | Soybean | nucleus | 83.41 | 64.14 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.57 | 63.72 |
| PGSC0003DMT400078306 | Potato | cytosol | 65.47 | 63.48 |
| VIT_18s0001g11670.t01 | Wine grape | endoplasmic reticulum, extracellular | 45.29 | 61.96 |
| VIT_04s0008g05030.t01 | Wine grape | cytosol | 82.96 | 60.66 |
| AT5G55080.1 | Thale cress | cytosol | 58.74 | 59.01 |
| OQU76666 | Sorghum | cytosol | 52.47 | 57.35 |
| Solyc06g082720.1.1 | Tomato | golgi | 43.05 | 47.29 |
| CDY61737 | Canola | cytosol, mitochondrion, nucleus | 13.0 | 43.28 |
| GSMUA_Achr6P01550_001 | Banana | nucleus | 84.3 | 39.5 |
Protein Annotations
| MapMan:23.5.1.4 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0016787 |
| InterPro:IPR002041 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00627 | PFscan:PS51418 | PANTHER:PTHR24071 |
| PANTHER:PTHR24071:SF5 | InterPro:Ran_GTPase | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS7B01G254000 | EnsemblPlants:TraesCS7B01G254000.2 |
| TIGR:cd00877 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:468122855..468124775
Molecular Weight (calculated)
25275.3 Da
IEP (calculated)
7.016
GRAVY (calculated)
-0.336
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: VQALPNTPPV DYPSFKLVLV GDGGTGKTTF VKRHVTGEFE KKYEPTIGVE VRPLDFQTSH GKIRFYCWDT AGQEKFGGLR DGYYIHGQCA IIMFDVTSRL
101: TYKNVPTWHR DICRVCENIP IVLCGNKVDV KNRQVKAKMV TFHRKKNLQY YEISAKSNYN FEKPFLYLAR KLSGDMTLRF VEETALLPAD VTVDLAAQQQ
201: IEAEIAAAAA MPLPDDDDDN IMD
101: TYKNVPTWHR DICRVCENIP IVLCGNKVDV KNRQVKAKMV TFHRKKNLQY YEISAKSNYN FEKPFLYLAR KLSGDMTLRF VEETALLPAD VTVDLAAQQQ
201: IEAEIAAAAA MPLPDDDDDN IMD
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ETPALAPPEV HIDIADQQKN
201: EAELLQAAAQ PLPDDDDDIF E
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ETPALAPPEV HIDIADQQKN
201: EAELLQAAAQ PLPDDDDDIF E
Arabidopsis Description
RAN1GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UC18]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.