Factsheet for Bra035562.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015554.1-P
Bra022775.1-P
Bra030675.1-P
Bra031555.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55190.1	Bra015554.1-P	AT1G07140.1	9025305
AT5G55190.1	Bra030675.1-P	AT1G07140.1	9025305
AT5G55190.1	Bra031555.1-P	AT1G07140.1	9025305
AT5G55190.1	Bra022775.1-P	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002926.1-P	Field mustard	cytosol, nucleus, plastid	99.09	99.09
AT5G55190.1	Thale cress	cytosol	98.64	98.64
VIT_04s0008g05020.t01	Wine grape	cytosol	98.19	98.19
CDY19907	Canola	cytosol	99.09	97.77
KRH52484	Soybean	cytosol	97.74	97.74
KRH61811	Soybean	cytosol	97.74	97.74
KRH61808	Soybean	nucleus	97.74	97.74
KRH52483	Soybean	nucleus	97.74	97.74
KRH52485	Soybean	cytosol	97.29	97.29
Solyc01g104700.2.1	Tomato	cytosol, nucleus	95.02	95.02
Solyc01g104680.2.1	Tomato	cytosol	95.02	95.02
Os01t0611100-01	Rice	plastid	95.02	95.02
Solyc05g023800.2.1	Tomato	nucleus	94.57	94.57
PGSC0003DMT400076528	Potato	cytosol	94.57	94.57
PGSC0003DMT400016576	Potato	cytosol	94.57	94.57
HORVU0Hr1G030130.1	Barley	cytosol	92.76	94.47
Zm00001d044054_P002	Maize	cytosol	93.67	93.67
Zm00001d011474_P001	Maize	cytosol, plastid	93.67	93.67
KXG32999	Sorghum	cytosol	93.67	93.67
EES01060	Sorghum	cytosol	92.76	93.18
Zm00001d011328_P001	Maize	cytosol	52.49	89.23
Zm00001d039091_P002	Maize	cytosol	93.67	87.71
CDY20779	Canola	vacuole	99.55	86.61
CDY17309	Canola	plastid	99.55	84.94
KXG22580	Sorghum	cytosol, nucleus	36.2	84.21
VIT_11s0016g04780.t01	Wine grape	plastid	98.19	83.46
TraesCS7B01G254000.2	Wheat	cytosol	83.71	82.96
Zm00001d039090_P001	Maize	cytosol	93.67	81.82
KRH61809	Soybean	nucleus	97.74	74.48
GSMUA_AchrUn_...	Banana	cytosol	70.14	68.58
TraesCS7D01G155200.2	Wheat	plastid	25.79	28.93

Protein Annotations

MapMan:23.5.1.4	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra035562	EnsemblPlants:Bra035562.1	EnsemblPlants:Bra035562.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150
GO:GO:0015031	GO:GO:0016787	InterPro:IPR002041	UniProt:M4F3B2	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00019AA89B	SEG:seg	:	:	:

Description

AT5G55190 (E=9e-121) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding

Coordinates

chrA02:+:7524749..7526330

Molecular Weight (calculated)

25110.9 Da

IEP (calculated)

6.862

GRAVY (calculated)

-0.444

Length

221 amino acids

Sequence
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAV IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDPNLHFV ESPALAPPEV QIDMAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.