Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011474_P001 | Maize | cytosol, plastid | 99.09 | 99.09 |
| KXG32999 | Sorghum | cytosol | 99.09 | 99.09 |
| AT5G55190.1 | Thale cress | cytosol | 93.67 | 93.67 |
| Bra035562.1-P | Field mustard | cytosol, nucleus, plastid | 93.67 | 93.67 |
| VIT_09s0002g05940.t01 | Wine grape | cytosol | 93.67 | 93.67 |
| VIT_04s0008g05020.t01 | Wine grape | cytosol | 93.21 | 93.21 |
| KRH61808 | Soybean | nucleus | 93.21 | 93.21 |
| KRH52483 | Soybean | nucleus | 93.21 | 93.21 |
| AT5G20020.1 | Thale cress | cytosol | 92.76 | 92.76 |
| Bra002926.1-P | Field mustard | cytosol, nucleus, plastid | 92.76 | 92.76 |
| KRH61811 | Soybean | cytosol | 92.76 | 92.76 |
| KRH52484 | Soybean | cytosol | 92.76 | 92.76 |
| KRH52485 | Soybean | cytosol | 92.31 | 92.31 |
| AT5G20010.1 | Thale cress | cytosol | 92.31 | 92.31 |
| CDY19907 | Canola | cytosol | 92.76 | 91.52 |
| Zm00001d039091_P002 | Maize | cytosol | 97.29 | 91.1 |
| Solyc01g104700.2.1 | Tomato | cytosol, nucleus | 90.95 | 90.95 |
| Solyc01g104680.2.1 | Tomato | cytosol | 90.95 | 90.95 |
| PGSC0003DMT400076528 | Potato | cytosol | 90.5 | 90.5 |
| Solyc05g023800.2.1 | Tomato | nucleus | 90.5 | 90.5 |
| PGSC0003DMT400016576 | Potato | cytosol | 90.5 | 90.5 |
| Zm00001d011328_P001 | Maize | cytosol | 51.58 | 87.69 |
| KRH56644 | Soybean | cytosol | 87.33 | 87.33 |
| CDX70904 | Canola | extracellular | 91.86 | 85.65 |
| Zm00001d039090_P001 | Maize | cytosol | 97.29 | 84.98 |
| TraesCS7B01G254000.2 | Wheat | cytosol | 85.52 | 84.75 |
| GSMUA_Achr5P09850_001 | Banana | plasma membrane | 93.21 | 83.74 |
| CDY06600 | Canola | cytosol | 93.67 | 83.47 |
| CDY20779 | Canola | vacuole | 93.21 | 81.1 |
| GSMUA_Achr6P01500_001 | Banana | vacuole | 91.86 | 80.56 |
| GSMUA_Achr1P11790_001 | Banana | cytosol, golgi | 93.21 | 79.84 |
| CDY17309 | Canola | plastid | 93.21 | 79.54 |
| VIT_11s0016g04780.t01 | Wine grape | plastid | 93.21 | 79.23 |
| GSMUA_Achr4P00780_001 | Banana | mitochondrion | 93.21 | 78.03 |
| GSMUA_Achr5P06130_001 | Banana | cytosol | 89.14 | 75.19 |
| GSMUA_Achr1P05300_001 | Banana | mitochondrion | 92.76 | 73.48 |
| GSMUA_Achr1P14580_001 | Banana | cytosol | 92.31 | 71.83 |
| KRH61809 | Soybean | nucleus | 92.76 | 70.69 |
| PGSC0003DMT400078306 | Potato | cytosol | 71.49 | 68.7 |
| VIT_04s0008g05030.t01 | Wine grape | cytosol | 93.67 | 67.87 |
| GSMUA_AchrUn_... | Banana | cytosol | 69.23 | 67.7 |
| VIT_18s0001g11670.t01 | Wine grape | endoplasmic reticulum, extracellular | 49.77 | 67.48 |
| AT5G55080.1 | Thale cress | cytosol | 63.35 | 63.06 |
| CDY61737 | Canola | cytosol, mitochondrion, nucleus | 18.1 | 59.7 |
| Solyc06g082720.1.1 | Tomato | golgi | 46.15 | 50.25 |
| GSMUA_Achr6P01550_001 | Banana | nucleus | 93.67 | 43.49 |
Protein Annotations
| MapMan:23.5.1.4 | Gene3D:3.40.50.300 | UniProt:A0A1D6NHH6 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016787 |
| InterPro:IPR002041 | ProteinID:ONM39835.1 | ProteinID:ONM39836.1 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00627 |
| PFscan:PS51418 | PANTHER:PTHR24071 | PANTHER:PTHR24071:SF8 | InterPro:Ran_GTPase | SMART:SM00173 | SMART:SM00174 |
| SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| UniParc:UPI00019AA938 | EnsemblPlantsGene:Zm00001d044054 | EnsemblPlants:Zm00001d044054_P002 | EnsemblPlants:Zm00001d044054_T002 | SEG:seg | : |
Description
GTP-binding nuclear protein Ran-2
Coordinates
chr3:-:217928198..217932236
Molecular Weight (calculated)
25115.0 Da
IEP (calculated)
7.148
GRAVY (calculated)
-0.417
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MALPNQQGVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFSTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTSRLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV EAVALKPPEV QIDMALQQQH
201: EAELAAAAAQ PLPDDDDDLI E
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV EAVALKPPEV QIDMALQQQH
201: EAELAAAAAQ PLPDDDDDLI E
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E
Arabidopsis Description
RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.