Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11709 | Sorghum | cytosol | 96.97 | 97.19 |
| Zm00001d026696_P005 | Maize | cytosol | 95.51 | 95.62 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 88.55 | 89.25 |
| TraesCS2A01G562500.1 | Wheat | golgi | 89.56 | 88.96 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 76.66 | 88.93 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 89.45 | 88.85 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 89.45 | 88.85 |
| GSMUA_Achr8P34170_001 | Banana | cytosol | 77.22 | 77.22 |
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 75.08 | 74.67 |
| KRG90653 | Soybean | cytosol | 74.97 | 74.55 |
| KRH36099 | Soybean | cytosol | 73.85 | 73.68 |
| Solyc01g111780.2.1 | Tomato | nucleus, plastid | 73.06 | 73.15 |
| GSMUA_Achr4P16350_001 | Banana | cytosol | 25.36 | 72.9 |
| VIT_18s0001g00910.t01 | Wine grape | cytosol | 70.93 | 71.25 |
| AT2G16950.1 | Thale cress | cytosol | 70.26 | 69.94 |
| CDY47482 | Canola | cytosol | 69.14 | 69.76 |
| Bra002011.1-P | Field mustard | cytosol | 68.8 | 69.58 |
| Bra037286.1-P | Field mustard | cytosol | 69.81 | 69.5 |
| CDY31391 | Canola | cytosol | 68.69 | 69.39 |
| CDY02225 | Canola | cytosol | 68.46 | 69.16 |
| Bra013038.1-P | Field mustard | cytosol | 68.24 | 69.01 |
| CDX89768 | Canola | cytosol | 66.44 | 67.66 |
| CDY26790 | Canola | cytosol | 8.87 | 66.95 |
| CDY71774 | Canola | cytosol | 20.43 | 64.31 |
| CDY26791 | Canola | cytosol | 8.98 | 62.5 |
| AT2G16953.1 | Thale cress | cytosol | 4.04 | 56.25 |
| CDY54431 | Canola | cytosol | 69.58 | 51.88 |
| AT2G16960.1 | Thale cress | cytosol | 31.54 | 50.91 |
| Bra010184.1-P | Field mustard | cytosol, mitochondrion | 16.39 | 47.87 |
| Zm00001d038021_P001 | Maize | plastid | 19.53 | 19.8 |
| Zm00001d010512_P001 | Maize | plastid | 19.42 | 19.75 |
| Zm00001d041556_P002 | Maize | cytosol | 18.97 | 17.12 |
| Zm00001d030694_P002 | Maize | mitochondrion | 18.74 | 15.55 |
| Os04t0691600-02 | Rice | plastid | 1.35 | 8.28 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:100381988 | MapMan:23.5.1.2.2 | InterPro:ARM-like | InterPro:ARM-type_fold | EMBL:BT062810 |
| UniProt:C0P3E1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 |
| InterPro:HEAT | InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | ProteinID:ONM15672.1 | ProteinID:ONM15678.1 |
| ProteinID:ONM15679.1 | ProteinID:ONM15693.1 | PFAM:PF02985 | PFAM:PF03810 | PFAM:PF13513 | PFscan:PS50166 |
| PANTHER:PTHR10527 | PANTHER:PTHR10527:SF3 | SMART:SM00913 | SUPFAM:SSF48371 | UniParc:UPI0001948B82 | EnsemblPlantsGene:Zm00001d002936 |
| EnsemblPlants:Zm00001d002936_P010 | EnsemblPlants:Zm00001d002936_T010 | SEG:seg | : | : | : |
Description
Transportin-1
Coordinates
chr2:+:27303900..27322285
Molecular Weight (calculated)
98805.0 Da
IEP (calculated)
4.599
GRAVY (calculated)
0.027
Length
891 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPAIWQPQ EQGLHEICTL LEAHISPNSD QARIWQQLQH YSQFPDFNNY LTFILARGEG KSIEVRQAAG LLLKNNLRTT FISMQPSSQH YVKSELLPCI
101: GATNRAIRST VGTVISVLFQ IVRVAGWIEL FQALHKCLES NDLDHMEGAM DAIYKICEDV PEELDVDVPG LSERPINVFM PKILQFFQSP HASLRKLSLG
201: CINQYIVVMP SALYMSMDQY IQGLFNLAKD PSADVRKLVC SAWVQLIEVR PSILESHLKN VTELILQANK DPDDEVALEA CEFWSAYCDV SMPPEGLREF
301: LPRLIPTLLS NMVYADDDES LDDAEEDESF PDRDQDLKPR FHASRLHGSQ TGDDDDDDDA VNVWNLRKCS AAGLDVLSNV FGDSILPTLM PLIEQNLART
401: DDNSWKERET AVLCLGAIAE GCIGGLYPHL PQIVAFLIPL LDDKFPLIRS ITCWTLSRYS KFIVQSLDHP NGREQFDKIL MGLLRRILDT NKRVQEAACS
501: AFATLEEEAS EELVPHLEVI LQHLMCAYGK YQRRNLRILY DALGTLADAV GAELNQAKYL DIFMPPLITK WQQLSNSDKD LFPLLECFTS IAQALGPGFA
601: QFAEPVFQRC INLIQSQQLA KIDPTAAGAV YDREFIVCSL DLLSGLAEGL GAGIESLVAQ SSLRDLLLQC CMDEAADVRQ SALALLGDLS RVCPIHLHPR
701: LQEFLTVAAK QLNPQSVKDA VSVANNACWA IGELAIKIGK EIAPVVITVV SCLITILKSP EGLNKSLVEN SAITLGRLSW VCPDIVAPHM EHFMQAWCSA
801: LCTIRDDFEK EDAFHGLCAM VAANPTGAAG SLAYICQACA SWTEIKSEGL HNEVCQILNG YKQLLGNNGG WEQCMAALKP DVVQKLARYG V
101: GATNRAIRST VGTVISVLFQ IVRVAGWIEL FQALHKCLES NDLDHMEGAM DAIYKICEDV PEELDVDVPG LSERPINVFM PKILQFFQSP HASLRKLSLG
201: CINQYIVVMP SALYMSMDQY IQGLFNLAKD PSADVRKLVC SAWVQLIEVR PSILESHLKN VTELILQANK DPDDEVALEA CEFWSAYCDV SMPPEGLREF
301: LPRLIPTLLS NMVYADDDES LDDAEEDESF PDRDQDLKPR FHASRLHGSQ TGDDDDDDDA VNVWNLRKCS AAGLDVLSNV FGDSILPTLM PLIEQNLART
401: DDNSWKERET AVLCLGAIAE GCIGGLYPHL PQIVAFLIPL LDDKFPLIRS ITCWTLSRYS KFIVQSLDHP NGREQFDKIL MGLLRRILDT NKRVQEAACS
501: AFATLEEEAS EELVPHLEVI LQHLMCAYGK YQRRNLRILY DALGTLADAV GAELNQAKYL DIFMPPLITK WQQLSNSDKD LFPLLECFTS IAQALGPGFA
601: QFAEPVFQRC INLIQSQQLA KIDPTAAGAV YDREFIVCSL DLLSGLAEGL GAGIESLVAQ SSLRDLLLQC CMDEAADVRQ SALALLGDLS RVCPIHLHPR
701: LQEFLTVAAK QLNPQSVKDA VSVANNACWA IGELAIKIGK EIAPVVITVV SCLITILKSP EGLNKSLVEN SAITLGRLSW VCPDIVAPHM EHFMQAWCSA
801: LCTIRDDFEK EDAFHGLCAM VAANPTGAAG SLAYICQACA SWTEIKSEGL HNEVCQILNG YKQLLGNNGG WEQCMAALKP DVVQKLARYG V
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.