Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02225 | Canola | cytosol | 95.66 | 94.9 |
| CDY31391 | Canola | cytosol | 91.77 | 91.04 |
| CDY26791 | Canola | cytosol | 13.26 | 90.62 |
| CDY47482 | Canola | cytosol | 91.43 | 90.6 |
| CDY26790 | Canola | cytosol | 11.54 | 85.59 |
| CDY71774 | Canola | cytosol | 26.51 | 81.98 |
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 74.29 | 72.54 |
| KRH36099 | Soybean | cytosol | 73.94 | 72.45 |
| KRG90653 | Soybean | cytosol | 73.94 | 72.21 |
| Solyc01g111780.2.1 | Tomato | nucleus, plastid | 72.46 | 71.24 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 67.77 | 67.08 |
| CDY54431 | Canola | cytosol | 91.2 | 66.78 |
| TraesCS2A01G562500.1 | Wheat | golgi | 68.23 | 66.56 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 68.23 | 66.56 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 68.23 | 66.56 |
| EES11709 | Sorghum | cytosol | 67.54 | 66.48 |
| Zm00001d002936_P010 | Maize | cytosol | 67.66 | 66.44 |
| GSMUA_Achr4P16360_001 | Banana | cytosol | 40.0 | 66.41 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 58.29 | 66.41 |
| Zm00001d026696_P005 | Maize | cytosol | 66.51 | 65.39 |
| AT2G16960.1 | Thale cress | cytosol | 38.63 | 61.23 |
| TraesCS2B01G426000.1 | Wheat | cytosol | 14.74 | 35.44 |
| TraesCS3A01G329100.1 | Wheat | cytosol, mitochondrion | 34.51 | 30.78 |
| CDY53085 | Canola | cytosol | 18.63 | 18.67 |
| CDY44668 | Canola | cytosol | 18.63 | 18.67 |
| CDY35657 | Canola | cytosol | 18.51 | 18.66 |
| CDY14379 | Canola | cytosol | 18.51 | 18.66 |
| CDX99262 | Canola | cytosol | 8.11 | 15.5 |
| CDY28068 | Canola | cytosol | 8.34 | 15.08 |
| Os04t0691600-02 | Rice | plastid | 1.14 | 6.9 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.2 | GO:A0A078DRF1 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlants:CDX89768 |
| ProteinID:CDX89768 | ProteinID:CDX89768.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 | EnsemblPlantsGene:GSBRNA2T00150208001 | InterPro:HEAT | InterPro:IPR001494 |
| InterPro:IPR011989 | InterPro:Importin-beta_N | PFAM:PF02985 | PFAM:PF03810 | PFscan:PS50166 | PANTHER:PTHR10527 |
| PANTHER:PTHR10527:SF3 | SMART:SM00913 | SUPFAM:SSF48371 | UniParc:UPI0004EDC345 | SEG:seg | : |
Description
BnaC03g46820D
Coordinates
chrLK031860:+:1596879..1603635
Molecular Weight (calculated)
97594.3 Da
IEP (calculated)
4.607
GRAVY (calculated)
-0.017
Length
875 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATAVVWQP REDGLSEICA LLEQQISPSS AAVDKSQIWK QLQHFSQIPD FNNYLVFILV RAQGKSVEIR QAAGLLLKNN LKGGYSSMAQ ENRKYIKSEL
101: LPCLGAVDRH IRTKVGTIIS EIVNIDGVSG RLELLPALVT WMICEDIPHV LDSEVPGLAE SPINIFLPRL FQFFQSPHAS LRKLALGCVN QYVIIMPAAL
201: YNSMDKYLQG LFVLANDPVA EVRKLVCAAF VQLTEVLPSS IEPHLRNVME YMLQVSKDPD EEVALEACEF WSAYCDAQLP PDNLKELLPR LIPVLLSNMA
301: YADDDESLFD AEEDESQPDR DQDLKPRFHT SRLHGSEDFD DDDDDSFNVW NLRKCSAAAI DVLSNVFGDE ILPALMPFIQ AKISTSGDET WKEREAAVLT
401: LGAIVEGCFN GLYPHLSEAN DKFPLIRSIS CWTLSRFGKY LIQETGNPKG YEQFEKVLMG LLRRLLDSNK RVQEAACSAF ATVEEDAAEE LVPHLGVILQ
501: HLMCAFGKYQ RRNLRIVYDA IGTLADSVRE ELNKPAYLEI LMPPLVAKWQ QLSNSDKDLF PLLECFTSIS QALGVGFAPF AQPVFQRCMD IIQLQQLAKV
601: DPASAGAQYD REFIVCSLDL LSGLAEGLGS GIESLISQSD LRDVLLKCCM DEAPDVRQSA FALMGDLARV FPAYLQPRLL EFLEIACQQL SANLIRENLS
701: VANNACWAIG ELAVKVGQEV SSIVTNVVSS LGLILQHEEA VNKSLVENSA ITLGRLAWIR PDLVAPHMEH FMKPWCLALS MVRDDNEKEE AFRGLCAVVK
801: VNPSGGVSSL VFICKAIASW HVSRDDNYRE IRSEDVKNEV SQVLNGYKHM LGNSWGECWS ALEPPVKERL SRYQV
101: LPCLGAVDRH IRTKVGTIIS EIVNIDGVSG RLELLPALVT WMICEDIPHV LDSEVPGLAE SPINIFLPRL FQFFQSPHAS LRKLALGCVN QYVIIMPAAL
201: YNSMDKYLQG LFVLANDPVA EVRKLVCAAF VQLTEVLPSS IEPHLRNVME YMLQVSKDPD EEVALEACEF WSAYCDAQLP PDNLKELLPR LIPVLLSNMA
301: YADDDESLFD AEEDESQPDR DQDLKPRFHT SRLHGSEDFD DDDDDSFNVW NLRKCSAAAI DVLSNVFGDE ILPALMPFIQ AKISTSGDET WKEREAAVLT
401: LGAIVEGCFN GLYPHLSEAN DKFPLIRSIS CWTLSRFGKY LIQETGNPKG YEQFEKVLMG LLRRLLDSNK RVQEAACSAF ATVEEDAAEE LVPHLGVILQ
501: HLMCAFGKYQ RRNLRIVYDA IGTLADSVRE ELNKPAYLEI LMPPLVAKWQ QLSNSDKDLF PLLECFTSIS QALGVGFAPF AQPVFQRCMD IIQLQQLAKV
601: DPASAGAQYD REFIVCSLDL LSGLAEGLGS GIESLISQSD LRDVLLKCCM DEAPDVRQSA FALMGDLARV FPAYLQPRLL EFLEIACQQL SANLIRENLS
701: VANNACWAIG ELAVKVGQEV SSIVTNVVSS LGLILQHEEA VNKSLVENSA ITLGRLAWIR PDLVAPHMEH FMKPWCLALS MVRDDNEKEE AFRGLCAVVK
801: VNPSGGVSSL VFICKAIASW HVSRDDNYRE IRSEDVKNEV SQVLNGYKHM LGNSWGECWS ALEPPVKERL SRYQV
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.