Factsheet for TraesCS2B01G426000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G150600.1
TraesCS1B01G168200.1
TraesCS1D01G147600.1
TraesCS2A01G440000.2
TraesCS2B01G461400.1
TraesCS2B01G461500.1
TraesCS2D01G118700.1
TraesCS2D01G438800.1
TraesCS2D01G438900.1
TraesCS4A01G137900.1
TraesCS4A01G293000.1
TraesCS4B01G020300.1
TraesCS4B01G148100.1
TraesCS4D01G018500.1
TraesCS4D01G153300.1
TraesCS5A01G015000.1
TraesCS5A01G197800.2
TraesCS5A01G272600.1
TraesCS5B01G013200.1
TraesCS5B01G185900.1
TraesCS5B01G272800.1
TraesCS5D01G020900.1
TraesCS5D01G193100.1
TraesCS5D01G280600.1
TraesCS6A01G085400.1
TraesCS6A01G216500.1
TraesCS6A01G268900.1
TraesCS6B01G246400.1
TraesCS6B01G296200.1
TraesCS6D01G199100.1
TraesCS6D01G246000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16950.1	TraesCS4A01G293000.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS4B01G020300.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS4D01G018500.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS5A01G015000.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS5B01G013200.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS5D01G020900.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS6A01G216500.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS6B01G246400.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS6D01G199100.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS1A01G150600.1	AT4G14300.1	14756317
AT2G16950.1	TraesCS1B01G168200.1	AT4G14300.1	14756317
AT2G16950.1	TraesCS1D01G147600.1	AT4G14300.1	14756317
AT2G16950.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT2G16950.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT2G16950.1	TraesCS4D01G153300.1	AT4G26630.1	25387881
AT2G16950.1	TraesCS2A01G440000.2	AT5G27080.1	20706207
AT2G16950.1	TraesCS2B01G461400.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS2B01G461500.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS2D01G118700.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS2D01G438800.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS2D01G438900.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS5A01G197800.2	AT5G27080.1	20706207
AT2G16950.1	TraesCS5A01G272600.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS5B01G185900.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS5B01G272800.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS5D01G193100.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS5D01G280600.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS6A01G085400.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS6A01G268900.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS6B01G296200.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS6D01G246000.1	AT5G27080.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26790	Canola	cytosol	6.32	19.49
CDY71774	Canola	cytosol	13.74	17.67
TraesCS2B01G624100.1	Wheat	cytosol	43.41	17.61
GSMUA_Achr8P34170_001	Banana	cytosol	42.03	17.17
KRG90653	Soybean	cytosol	40.66	16.52
VIT_18s0001g00910.t01	Wine grape	cytosol	40.11	16.46
KRH36099	Soybean	cytosol	39.84	16.24
AT2G16950.1	Thale cress	cytosol	39.56	16.09
Solyc01g111780.2.1	Tomato	nucleus, plastid	39.29	16.07
Bra002011.1-P	Field mustard	cytosol	38.46	15.89
GSMUA_Achr4P16350_001	Banana	cytosol	13.46	15.81
CDY31391	Canola	cytosol	38.19	15.76
VIT_03s0038g02830.t01	Wine grape	cytosol	38.46	15.62
CDY47482	Canola	cytosol	37.36	15.4
Bra013038.1-P	Field mustard	cytosol	36.81	15.21
Bra037286.1-P	Field mustard	cytosol	37.36	15.2
CDY02225	Canola	cytosol	36.81	15.19
CDX89768	Canola	cytosol	35.44	14.74
Bra010184.1-P	Field mustard	cytosol, mitochondrion	11.81	14.1
AT2G16960.1	Thale cress	cytosol	19.78	13.04
CDY54431	Canola	cytosol	39.29	11.97
TraesCS3A01G329100.1	Wheat	cytosol, mitochondrion	29.12	10.81
TraesCS5B01G088700.1	Wheat	cytosol	18.13	7.57
TraesCS5B01G088400.1	Wheat	cytosol	18.13	7.57
TraesCS1B01G083800.1	Wheat	cytosol	16.48	6.9
TraesCS1B01G236100.3	Wheat	cytosol	15.66	6.55
TraesCS5B01G034200.1	Wheat	cytosol	14.56	6.39
TraesCS4B01G192500.1	Wheat	endoplasmic reticulum	14.84	6.12
TraesCS5B01G051300.1	Wheat	cytosol	14.29	5.86
TraesCS4B01G307300.1	Wheat	cytosol	1.65	5.83
TraesCS2B01G506500.1	Wheat	cytosol	14.01	5.64
TraesCS7B01G222000.1	Wheat	cytosol	12.64	5.55
TraesCS2B01G505600.1	Wheat	cytosol	14.01	5.45
TraesCS2B01G362200.1	Wheat	cytosol	10.16	5.32
AT2G16953.1	Thale cress	cytosol	0.55	3.12
CDY26791	Canola	cytosol	0.82	2.34

Protein Annotations

EnsemblPlants:TraesCS2B01G426000.1	EnsemblPlantsGene:TraesCS2B01G426000	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	ncoils:Coil	PANTHER:PTHR10527	PANTHER:PTHR10527:SF3	SEG:seg
SUPFAM:SSF48371	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:612081518..612084374

Molecular Weight (calculated)

40842.1 Da

IEP (calculated)

5.440

GRAVY (calculated)

0.183

Length

364 amino acids

Sequence
(BLAST)

001: MERLFKALQD CMKNGVLNEM EGAMLMMLEI CERVPLQLGC NNPGLLERAI NYFFRRCLKM FESSHASLRK LALDSVNRYI IVLPILLRMY IDDRYLEGLS
101: YLLKQNGAGM RETKWKEREA AAKFIGSIGE VHMHEAHPRL PEVINLLIGL LKDEARAVST ATCMSLHHYS KFIVQSLGHP NGCLQFEDIL TTLHERITDI
201: DYDVARAAIS ALAVFEEEAA TLQKLIHQLS SEEDLFPLLC CFTTVAKIVC PGFSELAYPV LHGCLNVIKS QLFEEDSLRK TQIIFKCLHV LSLLARGVSA
301: DIGDLITPSF LREILVPCCE YEVALVQEAA LVLAGDLSEV IQNEEAAEEL RAIVARFSQA GPAR

Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.