Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31391 | Canola | cytosol | 73.05 | 98.98 |
| CDY02225 | Canola | cytosol | 68.87 | 93.31 |
| CDY47482 | Canola | cytosol | 68.7 | 92.98 |
| CDX89768 | Canola | cytosol | 66.78 | 91.2 |
| CDY26791 | Canola | cytosol | 9.71 | 90.62 |
| CDY71774 | Canola | cytosol | 21.09 | 89.05 |
| CDY26790 | Canola | cytosol | 8.45 | 85.59 |
| KRH36099 | Soybean | cytosol | 56.23 | 75.25 |
| KRG90653 | Soybean | cytosol | 56.07 | 74.78 |
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 55.9 | 74.55 |
| Solyc01g111780.2.1 | Tomato | nucleus, plastid | 54.98 | 73.82 |
| Zm00001d002936_P010 | Maize | cytosol | 51.88 | 69.58 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 44.69 | 69.53 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 51.38 | 69.46 |
| EES11709 | Sorghum | cytosol | 51.63 | 69.4 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 51.63 | 68.78 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 51.63 | 68.78 |
| TraesCS2A01G562500.1 | Wheat | golgi | 51.63 | 68.78 |
| GSMUA_Achr4P16360_001 | Banana | cytosol | 30.13 | 68.31 |
| Zm00001d026696_P005 | Maize | cytosol | 50.71 | 68.09 |
| AT2G16960.1 | Thale cress | cytosol | 28.79 | 62.32 |
| TraesCS2B01G426000.1 | Wheat | cytosol | 11.97 | 39.29 |
| TraesCS3A01G329100.1 | Wheat | cytosol, mitochondrion | 26.28 | 32.01 |
| CDY35657 | Canola | cytosol | 14.48 | 19.93 |
| CDY14379 | Canola | cytosol | 14.48 | 19.93 |
| CDY53085 | Canola | cytosol | 14.06 | 19.24 |
| CDY44668 | Canola | cytosol | 14.06 | 19.24 |
| CDY28068 | Canola | cytosol | 6.69 | 16.53 |
| CDX99262 | Canola | cytosol | 5.77 | 15.07 |
| Os04t0691600-02 | Rice | plastid | 0.84 | 6.9 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.2 | GO:A0A078IWP2 | UniProt:A0A078IWP2 | InterPro:ARM-like | InterPro:ARM-type_fold |
| EnsemblPlants:CDY54431 | ProteinID:CDY54431 | ProteinID:CDY54431.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0008536 | EnsemblPlantsGene:GSBRNA2T00014098001 | InterPro:HEAT | InterPro:IPR001494 | InterPro:IPR011989 |
| InterPro:Importin-beta_N | PFAM:PF02985 | PFAM:PF03810 | PFscan:PS50166 | PANTHER:PTHR10527 | PANTHER:PTHR10527:SF3 |
| SMART:SM00913 | SUPFAM:SSF48371 | UniParc:UPI0004EEBCF6 | SEG:seg | : | : |
Description
BnaCnng26980DBnaCnng26980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWP2]
Coordinates
chrLK033319:-:55015..63607
Molecular Weight (calculated)
132452.0 Da
IEP (calculated)
4.612
GRAVY (calculated)
0.129
Length
1195 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAATTVWQPR DDGLAEIFTL LEQQISPSSA VDKSQIWKQL EHFSQFPDFN NYLVFILVRA EGKAIGIRQA AGLLLKNNLK RVWMSMAQEN QKYIKSELLP
0101: CLGAVDRHIR TTVGTIISEV VNIEGVSGWL ELLPALVSCL DSNDLNHMDG AMDALSKICE DIPQVLDSEV PGLAERPINI FLPRLYQQFF QSPHASLRKL
0201: ALGCVNQYVI IMPAALYNSM DKYLQGLFVL ADDPVAEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNKDPDEEVA LEACEFWSAY CDAQLPTENL
0301: KEFLPRLIPV LLSNMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQAKLS
0401: ASGDEAWKER EAAVLTLGAI AEGCFNGLYP LLSKASSFLI LNHLIYLIFL HPIVAFLLPL LDDKFPLIRS ISCWTLSRFG KYLIQEIGNP KGYEQFEKVL
0501: MGLLRRLLDS NKRVQEAACS AFATVEEDAA EELVPHLQVI LQHLMCAFGK YQRRNLRIVY DAIGTLADSV REELNKPAYL EILMPPLVAK WQQLSNSDKD
0601: LFPLLECFTS ISQALGVGFA PFAQPVFQRC MDIIQLQLLA KVDPASAGAQ YDREFIVCSL DLLSGLAEGL GSGIESLISP SNLRDLLLKC CMDEASDVRQ
0701: SAFALMGDLA RVYPAYLQPR MVEFLEIASQ QLSANLIREN LSVANNACWA IGELAVKVRQ EVSPIVTNVA SSLGLILQHG EAVNKSLVEN SAITLGRLAW
0801: IRPDLVAPHM EHFLKPWCLA LSTVRDDIEK EDAFRGLCAV VKVNPSGGVS SLVFICKAIA SWHPAYLEIL MPPLVAKWQQ LSNSDKDLFP LLECFTSISQ
0901: ALGVGFAPFA QPVFQRCMDI IQLQLLAKVD PASAGAQYDR EFIVCSLDLL SGLSEGLGSG IESLISPSNL RDLLLKCCMD EASDVRQSAF ALMGDLARVY
1001: PAYLQPRMAE FLEIASQQLS ANLIRENLSV ANNACWAIGE LAVKVRQEVS PIVTNVASSL GLILQHGEAV NKSLVENSAI TLGRLAWIRP DLVAPHMEHF
1101: LKPWCLALST VRDDIEKEDA FRGLCAVVKV NPSGGVSSLV FICKAIASWH EIRSEDVNNE VSQVLNGYKQ LLGNSWAECL SALEPPVKER LARYV
0101: CLGAVDRHIR TTVGTIISEV VNIEGVSGWL ELLPALVSCL DSNDLNHMDG AMDALSKICE DIPQVLDSEV PGLAERPINI FLPRLYQQFF QSPHASLRKL
0201: ALGCVNQYVI IMPAALYNSM DKYLQGLFVL ADDPVAEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNKDPDEEVA LEACEFWSAY CDAQLPTENL
0301: KEFLPRLIPV LLSNMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQAKLS
0401: ASGDEAWKER EAAVLTLGAI AEGCFNGLYP LLSKASSFLI LNHLIYLIFL HPIVAFLLPL LDDKFPLIRS ISCWTLSRFG KYLIQEIGNP KGYEQFEKVL
0501: MGLLRRLLDS NKRVQEAACS AFATVEEDAA EELVPHLQVI LQHLMCAFGK YQRRNLRIVY DAIGTLADSV REELNKPAYL EILMPPLVAK WQQLSNSDKD
0601: LFPLLECFTS ISQALGVGFA PFAQPVFQRC MDIIQLQLLA KVDPASAGAQ YDREFIVCSL DLLSGLAEGL GSGIESLISP SNLRDLLLKC CMDEASDVRQ
0701: SAFALMGDLA RVYPAYLQPR MVEFLEIASQ QLSANLIREN LSVANNACWA IGELAVKVRQ EVSPIVTNVA SSLGLILQHG EAVNKSLVEN SAITLGRLAW
0801: IRPDLVAPHM EHFLKPWCLA LSTVRDDIEK EDAFRGLCAV VKVNPSGGVS SLVFICKAIA SWHPAYLEIL MPPLVAKWQQ LSNSDKDLFP LLECFTSISQ
0901: ALGVGFAPFA QPVFQRCMDI IQLQLLAKVD PASAGAQYDR EFIVCSLDLL SGLSEGLGSG IESLISPSNL RDLLLKCCMD EASDVRQSAF ALMGDLARVY
1001: PAYLQPRMAE FLEIASQQLS ANLIRENLSV ANNACWAIGE LAVKVRQEVS PIVTNVASSL GLILQHGEAV NKSLVENSAI TLGRLAWIRP DLVAPHMEHF
1101: LKPWCLALST VRDDIEKEDA FRGLCAVVKV NPSGGVSSLV FICKAIASWH EIRSEDVNNE VSQVLNGYKQ LLGNSWAECL SALEPPVKER LARYV
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.