Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 3
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY26790 | Canola | cytosol | 14.61 | 65.25 |
CDY26791 | Canola | cytosol | 15.75 | 64.84 |
AT2G16953.1 | Thale cress | cytosol | 6.64 | 54.69 |
GSMUA_Achr8P34170_001 | Banana | cytosol | 84.44 | 49.94 |
VIT_03s0038g02830.t01 | Wine grape | cytosol | 77.61 | 45.65 |
KRG90653 | Soybean | cytosol | 76.85 | 45.2 |
AT2G16960.1 | Thale cress | cytosol | 47.25 | 45.11 |
KRH36099 | Soybean | cytosol | 75.9 | 44.79 |
Solyc01g111780.2.1 | Tomato | nucleus, plastid | 73.06 | 43.26 |
Bra013038.1-P | Field mustard | cytosol | 67.55 | 40.41 |
Bra002011.1-P | Field mustard | cytosol | 67.55 | 40.41 |
AT2G16950.1 | Thale cress | cytosol | 68.5 | 40.34 |
CDY47482 | Canola | cytosol | 67.55 | 40.32 |
CDY02225 | Canola | cytosol | 67.17 | 40.14 |
CDY31391 | Canola | cytosol | 67.17 | 40.14 |
Bra037286.1-P | Field mustard | cytosol | 67.93 | 40.0 |
CDX89768 | Canola | cytosol | 66.41 | 40.0 |
Bra010184.1-P | Field mustard | cytosol, mitochondrion | 21.06 | 36.39 |
CDY54431 | Canola | cytosol | 68.31 | 30.13 |
GSMUA_Achr5P09580_001 | Banana | cytosol | 8.73 | 12.3 |
GSMUA_Achr3P25220_001 | Banana | cytosol | 18.03 | 11.86 |
GSMUA_Achr8P01910_001 | Banana | cytosol | 16.7 | 10.96 |
GSMUA_Achr1P28070_001 | Banana | cytosol | 17.46 | 10.95 |
GSMUA_Achr5P28110_001 | Banana | cytosol | 16.13 | 10.11 |
GSMUA_Achr10P... | Banana | cytosol | 16.13 | 10.11 |
GSMUA_Achr4P16350_001 | Banana | cytosol | 3.42 | 5.81 |
GSMUA_Achr5P09570_001 | Banana | cytosol | 2.09 | 4.55 |
CDY71774 | Canola | cytosol | 2.09 | 3.89 |
Protein Annotations
EnsemblPlants:GSMUA_Achr4P16360_001 | EnsemblPlants:GSMUA_Achr4T16360_001 | EnsemblPlantsGene:GSMUA_Achr4G16360_001 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:HEAT | InterPro:IPR011989 | PANTHER:PTHR10527 |
PANTHER:PTHR10527:SF3 | PFAM:PF02985 | PFAM:PF13513 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0002950256 |
UniProt:M0SPF0 | MapMan:23.5.1.2.2 | : | : | : | : |
Description
Putative Transportin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G16360_001]
Coordinates
chr4:+:14608584..14621925
Molecular Weight (calculated)
58468.1 Da
IEP (calculated)
5.480
GRAVY (calculated)
0.132
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MMHISFDLGR SALNLLRSVL AKNQLGQPPL EQKSSTTSDS SWKEREAAVL AIGAVAEGCI NGLYPHIPEI VTFLIPLLDD KFPLIRSITC WTLSRFSKFI
101: IQNIGHRDGY EQFDKVLMGV LRRILDSNKR VQEAACSAFA TLEEEAAEEL APRLEIILQH LLCAFGKYQR RNLRILYDAI GTLADAVGSE LNQPKYLDIL
201: MPPLIAKWQQ LANTDKDLFP LLECFTSIAQ ALGPAFSQFA EPVFQRCISL IEIQQLAKVD HVTAGVQYDK EFIVCSLDLL SGLAEGLGSG IETLVAKSNL
301: RDLLLQCCMD QATDIRQSAL ALLGDLAKVC PVHLHPRIPD FLRVAAEQLN ITAVKEAVSV ANNACWAIGE LAVQVRQEIA PVVLTVISYL VPILQNAEGL
401: NKSLRENSAI TLGRLGWICP ELVAPHVGHF IQPWCTALCM IRDDYEKEDA FRGLCAIVRT NPQGAVNSLS YLCKAVASWH EIQSEDLHND ICQVLNGYKQ
501: MLPNGAWEQC MSTLEPPVVQ RLSRFQV
101: IQNIGHRDGY EQFDKVLMGV LRRILDSNKR VQEAACSAFA TLEEEAAEEL APRLEIILQH LLCAFGKYQR RNLRILYDAI GTLADAVGSE LNQPKYLDIL
201: MPPLIAKWQQ LANTDKDLFP LLECFTSIAQ ALGPAFSQFA EPVFQRCISL IEIQQLAKVD HVTAGVQYDK EFIVCSLDLL SGLAEGLGSG IETLVAKSNL
301: RDLLLQCCMD QATDIRQSAL ALLGDLAKVC PVHLHPRIPD FLRVAAEQLN ITAVKEAVSV ANNACWAIGE LAVQVRQEIA PVVLTVISYL VPILQNAEGL
401: NKSLRENSAI TLGRLGWICP ELVAPHVGHF IQPWCTALCM IRDDYEKEDA FRGLCAIVRT NPQGAVNSLS YLCKAVASWH EIQSEDLHND ICQVLNGYKQ
501: MLPNGAWEQC MSTLEPPVVQ RLSRFQV
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.