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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • nucleus 2
  • mitochondrion 3
  • cytosol 2
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY26790 Canola cytosol 14.61 65.25
CDY26791 Canola cytosol 15.75 64.84
AT2G16953.1 Thale cress cytosol 6.64 54.69
GSMUA_Achr8P34170_001 Banana cytosol 84.44 49.94
VIT_03s0038g02830.t01 Wine grape cytosol 77.61 45.65
KRG90653 Soybean cytosol 76.85 45.2
AT2G16960.1 Thale cress cytosol 47.25 45.11
KRH36099 Soybean cytosol 75.9 44.79
Solyc01g111780.2.1 Tomato nucleus, plastid 73.06 43.26
Bra013038.1-P Field mustard cytosol 67.55 40.41
Bra002011.1-P Field mustard cytosol 67.55 40.41
AT2G16950.1 Thale cress cytosol 68.5 40.34
CDY47482 Canola cytosol 67.55 40.32
CDY02225 Canola cytosol 67.17 40.14
CDY31391 Canola cytosol 67.17 40.14
Bra037286.1-P Field mustard cytosol 67.93 40.0
CDX89768 Canola cytosol 66.41 40.0
Bra010184.1-P Field mustard cytosol, mitochondrion 21.06 36.39
CDY54431 Canola cytosol 68.31 30.13
GSMUA_Achr5P09580_001 Banana cytosol 8.73 12.3
GSMUA_Achr3P25220_001 Banana cytosol 18.03 11.86
GSMUA_Achr8P01910_001 Banana cytosol 16.7 10.96
GSMUA_Achr1P28070_001 Banana cytosol 17.46 10.95
GSMUA_Achr5P28110_001 Banana cytosol 16.13 10.11
GSMUA_Achr10P... Banana cytosol 16.13 10.11
GSMUA_Achr4P16350_001 Banana cytosol 3.42 5.81
GSMUA_Achr5P09570_001 Banana cytosol 2.09 4.55
CDY71774 Canola cytosol 2.09 3.89
Protein Annotations
EnsemblPlants:GSMUA_Achr4P16360_001EnsemblPlants:GSMUA_Achr4T16360_001EnsemblPlantsGene:GSMUA_Achr4G16360_001Gene3D:1.25.10.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:ARM-likeInterPro:ARM-type_foldInterPro:HEATInterPro:IPR011989PANTHER:PTHR10527
PANTHER:PTHR10527:SF3PFAM:PF02985PFAM:PF13513SEG:segSUPFAM:SSF48371UniParc:UPI0002950256
UniProt:M0SPF0MapMan:23.5.1.2.2::::
Description
Putative Transportin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G16360_001]
Coordinates
chr4:+:14608584..14621925
Molecular Weight (calculated)
58468.1 Da
IEP (calculated)
5.480
GRAVY (calculated)
0.132
Length
527 amino acids
Sequence
(BLAST)
001: MMHISFDLGR SALNLLRSVL AKNQLGQPPL EQKSSTTSDS SWKEREAAVL AIGAVAEGCI NGLYPHIPEI VTFLIPLLDD KFPLIRSITC WTLSRFSKFI
101: IQNIGHRDGY EQFDKVLMGV LRRILDSNKR VQEAACSAFA TLEEEAAEEL APRLEIILQH LLCAFGKYQR RNLRILYDAI GTLADAVGSE LNQPKYLDIL
201: MPPLIAKWQQ LANTDKDLFP LLECFTSIAQ ALGPAFSQFA EPVFQRCISL IEIQQLAKVD HVTAGVQYDK EFIVCSLDLL SGLAEGLGSG IETLVAKSNL
301: RDLLLQCCMD QATDIRQSAL ALLGDLAKVC PVHLHPRIPD FLRVAAEQLN ITAVKEAVSV ANNACWAIGE LAVQVRQEIA PVVLTVISYL VPILQNAEGL
401: NKSLRENSAI TLGRLGWICP ELVAPHVGHF IQPWCTALCM IRDDYEKEDA FRGLCAIVRT NPQGAVNSLS YLCKAVASWH EIQSEDLHND ICQVLNGYKQ
501: MLPNGAWEQC MSTLEPPVVQ RLSRFQV
Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.