Factsheet for GSMUA_AchrUn_randomP28020_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P19740_001
GSMUA_Achr2P01090_001
GSMUA_Achr2P21510_001
GSMUA_Achr3P19380_001
GSMUA_Achr3P22960_001
GSMUA_Achr5P09040_001
GSMUA_Achr5P26960_001
GSMUA_Achr6P23290_001
GSMUA_Achr8P16590_001
GSMUA_Achr8P30740_001
GSMUA_Achr9P29220_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	GSMUA_Achr9P29220_001	AT1G06590.1	20706207
AT4G33270.1	GSMUA_Achr8P30740_001	AT1G78770.1	20706207
AT4G33270.1	GSMUA_Achr3P19380_001	AT2G04660.1	20706207
AT4G33270.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809
AT4G33270.1	GSMUA_Achr1P19740_001	AT2G20000.1	20706207
AT4G33270.1	GSMUA_Achr5P26960_001	AT2G39090.1	20706207
AT4G33270.1	GSMUA_Achr2P21510_001	AT3G11830.1	20706207
AT4G33270.1	GSMUA_Achr8P16590_001	AT3G11830.1	20706207
AT4G33270.1	GSMUA_Achr11P...	AT3G48150.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr3P22960_001	AT4G28230.1	20706207
AT4G33270.1	GSMUA_Achr5P09040_001	AT5G26360.1	20706207
AT4G33270.1	GSMUA_Achr6P23290_001	AT5G26360.1	20706207
AT5G26900.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809
AT5G27080.1	GSMUA_Achr2P21510_001	AT3G11830.1	20706207
AT5G27080.1	GSMUA_Achr8P16590_001	AT3G11830.1	20706207
AT5G27080.1	GSMUA_Achr11P...	AT3G20050.1	20706207
AT5G27080.1	GSMUA_Achr2P01090_001	AT3G20050.1	20706207
AT5G27080.1	GSMUA_Achr5P09040_001	AT5G26360.1	20706207
AT5G27080.1	GSMUA_Achr6P23290_001	AT5G26360.1	20706207
AT5G27570.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	55.72	95.82
GSMUA_Achr1P27660_001	Banana	mitochondrion	37.47	95.65
GSMUA_AchrUn_...	Banana	cytosol	20.19	95.4
GSMUA_Achr1P27670_001	Banana	cytosol	14.36	93.65
GSMUA_Achr1P25940_001	Banana	cytosol	65.45	90.57
GSMUA_AchrUn_...	Banana	cytosol	65.21	73.63
GSMUA_Achr1P28050_001	Banana	cytosol	71.29	71.99
GSMUA_Achr3P21370_001	Banana	cytosol	65.94	68.26
GSMUA_AchrUn_...	Banana	cytosol	49.63	66.89
GSMUA_AchrUn_...	Banana	cytosol	40.39	58.04
CDY26774	Canola	mitochondrion	14.6	54.55
CDY59111	Canola	nucleus	27.25	51.85
CDY13491	Canola	cytosol	44.53	49.73
KRG94456	Soybean	cytosol	27.49	48.09
Bra034555.1-P	Field mustard	nucleus	42.82	46.44
AT4G33260.1	Thale cress	nucleus	49.63	45.64
GSMUA_Achr5P18020_001	Banana	nucleus, plastid	51.82	45.03
KRH44738	Soybean	nucleus	48.42	45.02
Bra005544.1-P	Field mustard	nucleus	47.93	44.87
AT4G33270.1	Thale cress	nucleus	49.63	44.64
CDY52543	Canola	nucleus	46.47	44.63
GSMUA_Achr11P...	Banana	plastid	51.34	44.51
GSMUA_Achr8P14580_001	Banana	nucleus, plastid	51.58	44.07
CDY59109	Canola	nucleus	44.77	43.91
CDY59110	Canola	nucleus	44.77	43.91
AT5G27570.1	Thale cress	nucleus	47.93	43.78
AT5G26900.1	Thale cress	nucleus	46.96	43.47
AT5G27080.1	Thale cress	nucleus	46.72	43.44
Bra037011.1-P	Field mustard	nucleus	44.28	43.44
KRH68047	Soybean	nucleus	48.18	43.33
Solyc08g005420.2.1	Tomato	nucleus	46.96	43.08
Bra008327.1-P	Field mustard	cytosol, mitochondrion	44.77	42.99
PGSC0003DMT400047585	Potato	nucleus	46.72	42.86
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	19.95	42.49
CDX68960	Canola	nucleus	42.58	42.37
CDY71694	Canola	nucleus	17.76	42.2
GSMUA_Achr10P...	Banana	nucleus	39.42	39.8
KRH07005	Soybean	nucleus	11.44	37.9
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	39.17	37.62
CDY44519	Canola	cytosol, nucleus	45.26	35.84
GSMUA_Achr11P...	Banana	mitochondrion	34.55	33.65
GSMUA_Achr5P07090_001	Banana	plastid	35.52	32.16
GSMUA_Achr11P...	Banana	plastid	34.06	28.81
Bra011430.1-P	Field mustard	cytosol	49.39	28.39
GSMUA_Achr11P...	Banana	plastid	31.63	26.48
CDY46124	Canola	cytosol	38.44	25.48
CDY28290	Canola	cytosol, mitochondrion, nucleus	8.52	23.97
GSMUA_Achr2P19120_001	Banana	cytosol	14.11	21.72

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSMUA_AchrUn_randomG28020_001	EnsemblPlants:GSMUA_AchrUn_randomP28020_001
EnsemblPlants:GSMUA_AchrUn_randomT28020_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0UD10	PFAM:PF00400
PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296A07D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Putative Anaphase-promoting complex subunit cdc20 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG28020_001]

Coordinates

chrchrUn_random:+:136346222..136347457

Molecular Weight (calculated)

45893.2 Da

IEP (calculated)

7.903

GRAVY (calculated)

-0.374

Length

411 amino acids

Sequence
(BLAST)

001: MDMDFARCAL TMPSRPQRDG SIESPSSVAY QKLLVQCIFK NRSRIFAFKS APESPADKVS QFDEDNRPHK KQQRRIPKDA DRVLAAYDIL DDDRLNLLDW
101: GSNNVLAIGL NDKVCLWNAA NKSSTEFSRA LEDNSPVTSI SWSPDGKVLA VALGNSDLDL VDAATRRVLV GIQGDSHSFV CSLAWRSNAI LTSRRSDGSI
201: VDYDIRKDDR AICDYRGHRL EVCSLKWSEL FGRYLASEGK DKLVHIWDTC MAVANHHPRQ HQLLHKISNH TSTVRALDWC PTRSNLLASG GGRNDHCIKF
301: WNAVNGVCLN SIDTGSEVCA LLWDKNKSEL LTSHGFPNNQ LTLWNYTSMT RKAELFGHSS RVLYLAGSPL GGVVASAAED ETLKFWNAFE IPKPPKPEAN
401: TVPFAQFSVI R

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.