Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G27080.1 | Thale cress | nucleus | 93.92 | 94.34 |
| AT5G27570.1 | Thale cress | nucleus | 89.19 | 88.0 |
| AT4G33260.1 | Thale cress | nucleus | 76.8 | 76.29 |
| AT4G33270.1 | Thale cress | nucleus | 77.25 | 75.05 |
| CDY59111 | Canola | nucleus | 35.36 | 72.69 |
| OQU82251 | Sorghum | cytosol | 27.48 | 69.71 |
| AT5G27945.1 | Thale cress | cytosol, plastid, vacuole | 65.54 | 67.99 |
| Bra005544.1-P | Field mustard | nucleus | 65.32 | 66.06 |
| CDY52543 | Canola | nucleus | 63.29 | 65.65 |
| KRH44738 | Soybean | nucleus | 65.09 | 65.38 |
| CDY59110 | Canola | nucleus | 61.49 | 65.16 |
| CDY59109 | Canola | nucleus | 61.49 | 65.16 |
| CDY26774 | Canola | mitochondrion | 15.99 | 64.55 |
| KRH68047 | Soybean | nucleus | 66.22 | 64.33 |
| Os02t0700100-01 | Rice | extracellular | 66.22 | 62.69 |
| KRG94456 | Soybean | cytosol | 33.11 | 62.55 |
| KXG30937 | Sorghum | nucleus | 66.22 | 62.42 |
| TraesCS5A01G272600.1 | Wheat | plastid | 65.32 | 62.1 |
| Bra008327.1-P | Field mustard | cytosol, mitochondrion | 59.68 | 61.92 |
| TraesCS5B01G272800.1 | Wheat | plastid | 65.09 | 61.75 |
| TraesCS5D01G280600.1 | Wheat | plastid | 65.09 | 61.75 |
| EES06634 | Sorghum | nucleus | 65.99 | 61.68 |
| Zm00001d016034_P002 | Maize | nucleus | 65.32 | 61.57 |
| TraesCS6B01G296200.1 | Wheat | plastid | 65.32 | 61.18 |
| TraesCS6A01G268900.1 | Wheat | plastid | 65.32 | 61.18 |
| TraesCS6D01G246000.1 | Wheat | plastid | 65.32 | 61.05 |
| PGSC0003DMT400047585 | Potato | nucleus | 61.49 | 60.94 |
| Solyc08g005420.2.1 | Tomato | nucleus | 61.49 | 60.94 |
| Zm00001d000168_P001 | Maize | plastid | 65.09 | 60.59 |
| CDY71694 | Canola | nucleus | 23.2 | 59.54 |
| TraesCS2B01G461400.1 | Wheat | nucleus | 65.09 | 59.1 |
| TraesCS2D01G438800.1 | Wheat | nucleus | 64.41 | 58.73 |
| TraesCS2A01G440000.2 | Wheat | nucleus | 64.19 | 58.16 |
| Os04t0599800-01 | Rice | nucleus | 63.74 | 56.15 |
| TraesCS6A01G085400.1 | Wheat | nucleus | 48.2 | 56.02 |
| TraesCS5D01G193100.1 | Wheat | mitochondrion, nucleus | 58.56 | 54.62 |
| TraesCS5A01G197800.2 | Wheat | mitochondrion, plastid | 58.56 | 54.62 |
| TraesCS5B01G185900.1 | Wheat | mitochondrion, nucleus | 58.11 | 54.2 |
| HORVU5Hr1G074370.15 | Barley | endoplasmic reticulum, vacuole | 57.43 | 53.68 |
| Os09t0242300-00 | Rice | plastid | 56.98 | 52.93 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.14 | 51.72 |
| GSMUA_Achr1P27660_001 | Banana | mitochondrion | 18.69 | 51.55 |
| KXG27036 | Sorghum | cytosol | 20.95 | 51.38 |
| CDY44519 | Canola | cytosol, nucleus | 59.46 | 50.87 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.8 | 49.79 |
| HORVU5Hr1G041780.3 | Barley | plastid | 58.78 | 48.24 |
| GSMUA_Achr1P25940_001 | Banana | cytosol | 31.98 | 47.81 |
| GSMUA_Achr1P27670_001 | Banana | cytosol | 6.76 | 47.62 |
| GSMUA_Achr3P21370_001 | Banana | cytosol | 42.57 | 47.61 |
| HORVU6Hr1G068080.3 | Barley | plastid | 56.76 | 47.28 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.74 | 47.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.47 | 46.96 |
| GSMUA_Achr1P28050_001 | Banana | cytosol | 42.34 | 46.19 |
| CDY28290 | Canola | cytosol, mitochondrion, nucleus | 14.86 | 45.21 |
| KRH07005 | Soybean | nucleus | 12.61 | 45.16 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.63 | 44.59 |
| Zm00001d017725_P001 | Maize | mitochondrion | 30.41 | 43.13 |
| Zm00001d005562_P001 | Maize | plastid | 18.24 | 39.13 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.1 | 37.41 |
| AT5G13840.1 | Thale cress | plastid | 39.64 | 36.59 |
| AT4G22910.1 | Thale cress | nucleus, plastid | 39.41 | 36.23 |
| AT4G11920.1 | Thale cress | nucleus | 38.29 | 35.79 |
| TraesCS2D01G118700.1 | Wheat | cytosol | 13.96 | 29.52 |
| Zm00001d009154_P001 | Maize | extracellular, plasma membrane, plastid | 8.11 | 24.66 |
| Zm00001d006622_P001 | Maize | golgi | 15.09 | 19.82 |
| TraesCS2D01G438900.1 | Wheat | mitochondrion | 1.13 | 1.23 |
| TraesCS2B01G461500.1 | Wheat | mitochondrion | 1.13 | 1.22 |
Protein Annotations
| MapMan:13.3.4.1.4 | Gene3D:2.130.10.10 | EntrezGene:832748 | ProteinID:AAB61049.1 | ProteinID:AED93621.1 | ArrayExpress:AT5G26900 |
| EnsemblPlantsGene:AT5G26900 | RefSeq:AT5G26900 | TAIR:AT5G26900 | RefSeq:AT5G26900-TAIR-G | EnsemblPlants:AT5G26900.1 | TAIR:AT5G26900.1 |
| InterPro:Apc4_WD40_dom | Unigene:At.55028 | InterPro:Cdc20/Fizzy | EMBL:DQ056692 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 | GO:GO:0016567 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0051301 | GO:GO:0097027 | GO:GO:1904668 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_198042.1 | PFAM:PF00400 | PFAM:PF12894 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19918 | PANTHER:PTHR19918:SF30 | UniProt:Q4PSE4 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00001625D7 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
CDC20-4Cell division cycle 20.4, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q4PSE4]
Coordinates
chr5:+:9463752..9465086
Molecular Weight (calculated)
49233.9 Da
IEP (calculated)
8.661
GRAVY (calculated)
-0.498
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGMRATCT VPEHFLPRKL SKQNLDRFIP NRSAKDFDFA NYALTQGSKR NLDEVTSASR KAYMTQLAVV MNQNRTRILA FRNKPKSLLS TNHSDSPHQN
101: PKPVKPRRYI PQNSERVLDA PGLRDDFSLN LLDWGSANVL AIALGDTVYL WDASSGSTSE LVTIDEDKGP VTSINWTQDG LDLAVGLDNS EVQLWDCVSN
201: RQVRTLRGGH ESRVGSLAWD NHILTTGGMD GKIVNNDVRI RSSIVETYLG HTEEVCGLKW SESGNKQASG GNDNVVHIWD RSLASSKQTR QWLHRFEEHT
301: AAVRALAWCP FQASLLATGG GVGDGKIKFW NTHTGACLNS VETGSQVCSL LWSQSERELL SSHGFTQNQL TLWKYPSMSK MAELNGHTSR VLFMAQSPNG
401: CTVASAAGDE NLRLWNVFGE PPKTTKKAAS KKYPELFSHV NSLR
101: PKPVKPRRYI PQNSERVLDA PGLRDDFSLN LLDWGSANVL AIALGDTVYL WDASSGSTSE LVTIDEDKGP VTSINWTQDG LDLAVGLDNS EVQLWDCVSN
201: RQVRTLRGGH ESRVGSLAWD NHILTTGGMD GKIVNNDVRI RSSIVETYLG HTEEVCGLKW SESGNKQASG GNDNVVHIWD RSLASSKQTR QWLHRFEEHT
301: AAVRALAWCP FQASLLATGG GVGDGKIKFW NTHTGACLNS VETGSQVCSL LWSQSERELL SSHGFTQNQL TLWKYPSMSK MAELNGHTSR VLFMAQSPNG
401: CTVASAAGDE NLRLWNVFGE PPKTTKKAAS KKYPELFSHV NSLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.