Factsheet for AT5G27570.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G27080.1	Thale cress	nucleus	88.67	90.27
AT5G26900.1	Thale cress	nucleus	88.0	89.19
AT4G33260.1	Thale cress	nucleus	78.22	78.75
AT4G33270.1	Thale cress	nucleus	78.89	77.68
CDY59111	Canola	nucleus	35.78	74.54
OQU82251	Sorghum	cytosol	28.67	73.71
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	67.56	71.03
KRH44738	Soybean	nucleus	67.78	69.0
KRH68047	Soybean	nucleus	69.56	68.49
Bra005544.1-P	Field mustard	nucleus	65.78	67.43
CDY52543	Canola	nucleus	63.78	67.06
KRG94456	Soybean	cytosol	34.67	66.38
CDY59110	Canola	nucleus	61.78	66.35
CDY59109	Canola	nucleus	61.78	66.35
CDY26774	Canola	mitochondrion	16.0	65.45
KXG30937	Sorghum	nucleus	67.11	64.12
TraesCS5A01G272600.1	Wheat	plastid	66.44	64.03
Os02t0700100-01	Rice	extracellular	66.44	63.75
TraesCS5D01G280600.1	Wheat	plastid	66.0	63.46
Zm00001d016034_P002	Maize	nucleus	66.22	63.27
TraesCS5B01G272800.1	Wheat	plastid	65.78	63.25
Bra008327.1-P	Field mustard	cytosol, mitochondrion	60.0	63.08
CDY71694	Canola	nucleus	24.22	63.01
EES06634	Sorghum	nucleus	66.44	62.95
TraesCS6A01G268900.1	Wheat	plastid	66.22	62.87
TraesCS6D01G246000.1	Wheat	plastid	66.22	62.74
Solyc08g005420.2.1	Tomato	nucleus	62.44	62.72
PGSC0003DMT400047585	Potato	nucleus	62.44	62.72
TraesCS6B01G296200.1	Wheat	plastid	66.0	62.66
Zm00001d000168_P001	Maize	plastid	66.0	62.26
TraesCS2B01G461400.1	Wheat	nucleus	65.11	59.92
TraesCS2D01G438800.1	Wheat	nucleus	64.22	59.34
TraesCS2A01G440000.2	Wheat	nucleus	64.44	59.18
GSMUA_AchrUn_...	Banana	cytosol	11.33	58.62
Os04t0599800-01	Rice	nucleus	64.89	57.94
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	59.56	56.3
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	59.33	56.09
GSMUA_Achr1P27660_001	Banana	mitochondrion	20.0	55.9
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	59.11	55.88
TraesCS6A01G085400.1	Wheat	nucleus	47.33	55.76
GSMUA_Achr1P27670_001	Banana	cytosol	7.78	55.56
Os09t0242300-00	Rice	plastid	58.22	54.81
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	57.33	54.32
GSMUA_AchrUn_...	Banana	cytosol	28.22	53.14
KXG27036	Sorghum	cytosol	21.11	52.49
CDY44519	Canola	cytosol, nucleus	58.89	51.06
GSMUA_Achr1P25940_001	Banana	cytosol	33.11	50.17
KRH07005	Soybean	nucleus	13.56	49.19
HORVU5Hr1G041780.3	Barley	plastid	59.11	49.17
HORVU6Hr1G068080.3	Barley	plastid	58.22	49.16
GSMUA_Achr3P21370_001	Banana	cytosol	43.11	48.87
GSMUA_AchrUn_...	Banana	cytosol	38.89	48.08
CDY28290	Canola	cytosol, mitochondrion, nucleus	15.56	47.95
GSMUA_AchrUn_...	Banana	nucleus	43.78	47.93
GSMUA_Achr1P28050_001	Banana	cytosol	42.67	47.17
GSMUA_AchrUn_...	Banana	cytosol	31.11	45.9
Zm00001d017725_P001	Maize	mitochondrion	31.33	45.05
Zm00001d005562_P001	Maize	plastid	18.22	39.61
AT5G13840.1	Thale cress	plastid	40.67	38.05
GSMUA_AchrUn_...	Banana	cytosol	23.78	37.41
AT4G22910.1	Thale cress	nucleus, plastid	40.0	37.27
AT4G11920.1	Thale cress	nucleus	39.33	37.26
TraesCS2D01G118700.1	Wheat	cytosol	13.78	29.52
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	8.67	26.71
Zm00001d006622_P001	Maize	golgi	15.11	20.12
TraesCS2D01G438900.1	Wheat	mitochondrion	0.89	0.98
TraesCS2B01G461500.1	Wheat	mitochondrion	0.89	0.98

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	EntrezGene:832817	EMBL:AC007478	ProteinID:AED93702.2	ArrayExpress:AT5G27570
EnsemblPlantsGene:AT5G27570	RefSeq:AT5G27570	TAIR:AT5G27570	RefSeq:AT5G27570-TAIR-G	EnsemblPlants:AT5G27570.1	TAIR:AT5G27570.1
InterPro:Apc4_WD40_dom	Unigene:At.65557	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0016567	GO:GO:0019538
GO:GO:0019900	GO:GO:0030234	GO:GO:0051301	GO:GO:0080008	GO:GO:0097027	GO:GO:1904668
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_198109.2	PFAM:PF00400	PFAM:PF12894
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	UniProt:Q3E906
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000848BBDB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

CDC20-5Transducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G27570]

Coordinates

chr5:-:9734896..9736250

Molecular Weight (calculated)

50102.1 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.455

Length

450 amino acids

Sequence
(BLAST)

001: MMNTSSHLKA QASCPLVEHF LRRKLSKENF DRFIPNRSAM DFDFANYALT QGRKRNVDEV TSASRKAYMT QLAEAMNQNR TRILAFRNKP KALLSSNHSD
101: PPHQQPISVK PRRYIPQNSE RVLDAPGIAD DFYLNLLDWG SSNVLAIALG DTVYLWDASS GSTYKLVTID EEEGPVTSIN WTQDGLDLAI GLDNSEVQLW
201: DCVSNRQVRT LRGGHESRVG SLAWNNHILT TGGMDGKIVN NDVRIRSSIV ETYLGHTEEV CGLKWSESGK KLASGGNDNV VHIWDHRSVA SSNPTRQWLH
301: RFEEHTAAVR ALAWCPFQAS LLATGGGVGD GKIKFWNTHT GACLNSVETG SQVCSLLWSK SERELLSSHG FTQNQLTLWK YPSMVKMAEL NGHTSRVLFM
401: AQSPDGCTVA SAAGDETLRL WNVFGEPPKT TKKAASKKYT DPFAHVNHIR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.