Factsheet for GSMUA_Achr1P27660_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P19740_001
GSMUA_Achr2P01090_001
GSMUA_Achr2P21510_001
GSMUA_Achr3P19380_001
GSMUA_Achr3P22960_001
GSMUA_Achr5P09040_001
GSMUA_Achr5P26960_001
GSMUA_Achr6P23290_001
GSMUA_Achr8P16590_001
GSMUA_Achr8P30740_001
GSMUA_Achr9P29220_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	GSMUA_Achr9P29220_001	AT1G06590.1	20706207
AT4G33270.1	GSMUA_Achr8P30740_001	AT1G78770.1	20706207
AT4G33270.1	GSMUA_Achr3P19380_001	AT2G04660.1	20706207
AT4G33270.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809
AT4G33270.1	GSMUA_Achr1P19740_001	AT2G20000.1	20706207
AT4G33270.1	GSMUA_Achr5P26960_001	AT2G39090.1	20706207
AT4G33270.1	GSMUA_Achr2P21510_001	AT3G11830.1	20706207
AT4G33270.1	GSMUA_Achr8P16590_001	AT3G11830.1	20706207
AT4G33270.1	GSMUA_Achr11P...	AT3G48150.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr3P22960_001	AT4G28230.1	20706207
AT4G33270.1	GSMUA_Achr5P09040_001	AT5G26360.1	20706207
AT4G33270.1	GSMUA_Achr6P23290_001	AT5G26360.1	20706207
AT5G26900.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809
AT5G27080.1	GSMUA_Achr2P21510_001	AT3G11830.1	20706207
AT5G27080.1	GSMUA_Achr8P16590_001	AT3G11830.1	20706207
AT5G27080.1	GSMUA_Achr11P...	AT3G20050.1	20706207
AT5G27080.1	GSMUA_Achr2P01090_001	AT3G20050.1	20706207
AT5G27080.1	GSMUA_Achr5P09040_001	AT5G26360.1	20706207
AT5G27080.1	GSMUA_Achr6P23290_001	AT5G26360.1	20706207
AT5G27570.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	50.93	94.25
GSMUA_Achr1P27670_001	Banana	cytosol	36.02	92.06
GSMUA_AchrUn_...	Banana	cytosol	95.03	64.02
GSMUA_Achr1P25940_001	Banana	cytosol	93.79	50.84
GSMUA_AchrUn_...	Banana	cytosol	77.02	40.66
CDY59111	Canola	nucleus	53.42	39.81
GSMUA_AchrUn_...	Banana	nucleus	95.65	37.47
GSMUA_AchrUn_...	Banana	cytosol	78.26	34.62
CDY26774	Canola	mitochondrion	22.98	33.64
CDY71694	Canola	nucleus	34.16	31.79
GSMUA_Achr1P28050_001	Banana	cytosol	76.4	30.22
GSMUA_Achr3P21370_001	Banana	cytosol	68.94	27.96
KRG94456	Soybean	cytosol	37.89	25.96
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	31.06	25.91
Bra034555.1-P	Field mustard	nucleus	57.76	24.54
CDY13491	Canola	cytosol	52.8	23.1
KRH44738	Soybean	nucleus	59.01	21.49
AT4G33260.1	Thale cress	nucleus	58.39	21.03
GSMUA_Achr5P18020_001	Banana	nucleus, plastid	61.49	20.93
KRH68047	Soybean	nucleus	59.01	20.79
AT4G33270.1	Thale cress	nucleus	58.39	20.57
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	54.66	20.56
GSMUA_Achr11P...	Banana	plastid	59.01	20.04
AT5G27570.1	Thale cress	nucleus	55.9	20.0
GSMUA_Achr8P14580_001	Banana	nucleus, plastid	59.63	19.96
Bra008327.1-P	Field mustard	cytosol, mitochondrion	51.55	19.39
Bra005544.1-P	Field mustard	nucleus	52.8	19.36
PGSC0003DMT400047585	Potato	nucleus	53.42	19.2
AT5G27080.1	Thale cress	nucleus	51.55	18.78
AT5G26900.1	Thale cress	nucleus	51.55	18.69
Solyc08g005420.2.1	Tomato	nucleus	51.55	18.53
CDY52543	Canola	nucleus	47.83	17.99
GSMUA_Achr10P...	Banana	nucleus	43.48	17.2
Bra037011.1-P	Field mustard	nucleus	44.1	16.95
CDY59110	Canola	nucleus	44.1	16.95
CDY59109	Canola	nucleus	44.1	16.95
CDY44519	Canola	cytosol, nucleus	51.55	15.99
CDX68960	Canola	nucleus	39.75	15.5
GSMUA_Achr5P07090_001	Banana	plastid	42.86	15.2
GSMUA_Achr11P...	Banana	mitochondrion	38.51	14.69
GSMUA_Achr11P...	Banana	plastid	42.86	14.2
GSMUA_Achr11P...	Banana	plastid	39.75	13.03
Bra011430.1-P	Field mustard	cytosol	57.76	13.01
GSMUA_Achr2P19120_001	Banana	cytosol	18.01	10.86
CDY46124	Canola	cytosol	40.37	10.48
GSMUA_AchrUn_...	Banana	cytosol	8.7	4.9
KRH07005	Soybean	nucleus	0.62	0.81
CDY28290	Canola	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538
GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSMUA_Achr1G27660_001	EnsemblPlants:GSMUA_Achr1P27660_001	EnsemblPlants:GSMUA_Achr1T27660_001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0S3M3	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF12	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002966C14	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

Putative Protein FIZZY-RELATED 3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G27660_001]

Coordinates

chr1:+:25087990..25088475

Molecular Weight (calculated)

17896.2 Da

IEP (calculated)

8.520

GRAVY (calculated)

-0.336

Length

161 amino acids

Sequence
(BLAST)

001: MAVANHHPRQ HQLLHKISNH TSTVRALDWC PTRSNLLASG GGRNDHCIKF WNAVNGVSLN SIDTGSEVCA LLWDKNNSEL LTSHGFPNNQ LTLWNYTSMM
101: RKAELFGHSS RVLYLAGSPL GGVVASATED ETLKFWNVFE TPKPPKPEAN TVPFAQFNVI R

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.