CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71989
CDX73850
CDX74120
CDX74867
CDX79070
CDX79885
CDX82833
CDX87437
CDX88475
CDX89193
CDX98240
CDY01062
CDY04835
CDY06071
CDY06219
CDY06464
CDY06653
CDY08491
CDY08664
CDY09966
CDY10211
CDY10563
CDY18835
CDY18994
CDY22476
CDY30292
CDY30835
CDY35917
CDY36901
CDY40468
CDY44628
CDY44976
CDY49990
CDY53501
CDY53538
CDY53919
CDY58069
CDY58070
CDY67306
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	CDY06219	AT1G06590.1	20706207
AT4G33270.1	CDY06653	AT1G06590.1	20706207
AT4G33270.1	CDY09966	AT1G06590.1	20706207
AT4G33270.1	CDY10211	AT1G06590.1	20706207
AT4G33270.1	CDX87437	AT1G78770.1	20706207
AT4G33270.1	CDX88475	AT1G78770.1	20706207
AT4G33270.1	CDY10563	AT1G78770.1	20706207
AT4G33270.1	CDY04835	AT2G04660.1	20706207
AT4G33270.1	CDY30292	AT2G04660.1	20706207
AT4G33270.1	CDY30835	AT2G04660.1	20706207
AT4G33270.1	CDY35917	AT2G20000.1	17944809
AT4G33270.1	CDY40468	AT2G20000.1	17944809
AT4G33270.1	CDY35917	AT2G20000.1	20706207
AT4G33270.1	CDY40468	AT2G20000.1	20706207
AT4G33270.1	CDX74867	AT2G39090.1	20706207
AT4G33270.1	CDY06464	AT2G39090.1	20706207
AT4G33270.1	CDY44628	AT2G39090.1	20706207
AT4G33270.1	CDY53538	AT2G39090.1	20706207
AT4G33270.1	CDX79885	AT2G42260.1	20706207
AT4G33270.1	CDY53501	AT2G42260.1	20706207
AT4G33270.1	CDX73850	AT3G11830.1	20706207
AT4G33270.1	CDY01062	AT3G11830.1	20706207
AT4G33270.1	CDY08491	AT3G11830.1	20706207
AT4G33270.1	CDY53919	AT3G11830.1	20706207
AT4G33270.1	CDY67306	AT3G11830.1	20706207
AT4G33270.1	CDY36901	AT3G48150.1	20706207
AT4G33270.1	CDY44976	AT3G48150.1	20706207
AT4G33270.1	CDY58069	AT3G48150.1	20706207
AT4G33270.1	CDY58070	AT3G48150.1	20706207
AT4G33270.1	CDY70805	AT3G48150.1	20706207
AT4G33270.1	CDX71989	AT3G57860.1	20706207
AT4G33270.1	CDX98240	AT3G57860.1	20706207
AT4G33270.1	CDY06071	AT3G57860.1	20706207
AT4G33270.1	CDY08664	AT3G57860.1	20706207
AT4G33270.1	CDY22476	AT3G57860.1	20706207
AT4G33270.1	CDX79070	AT4G21530.1	20706207
AT4G33270.1	CDX82833	AT4G21530.1	20706207
AT4G33270.1	CDX89193	AT4G28230.1	20706207
AT4G33270.1	CDY18994	AT4G28230.1	20706207
AT4G33270.1	CDX74120	AT5G26360.1	20706207
AT4G33270.1	CDY18835	AT5G26360.1	20706207
AT4G33270.1	CDY49990	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75343	Canola	nucleus	85.05	83.91
Bra034555.1-P	Field mustard	nucleus	85.6	83.11
AT4G33260.1	Thale cress	nucleus	95.65	78.75
AT4G33270.1	Thale cress	nucleus	95.92	77.24
CDX68960	Canola	nucleus	83.97	74.82
CDY59111	Canola	nucleus	40.49	68.98
CDY71694	Canola	nucleus	31.25	66.47
CDY52543	Canola	nucleus	72.01	61.92
KRH68047	Soybean	nucleus	76.36	61.49
CDY59109	Canola	nucleus	69.84	61.34
CDY59110	Canola	nucleus	69.84	61.34
KRH44738	Soybean	nucleus	73.64	61.31
CDY26774	Canola	mitochondrion	18.21	60.91
GSMUA_AchrUn_...	Banana	cytosol	14.13	59.77
Solyc08g005420.2.1	Tomato	nucleus	69.02	56.7
PGSC0003DMT400047585	Potato	nucleus	69.02	56.7
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	29.62	56.48
CDY71065	Canola	cytosol	15.76	56.31
KRG94456	Soybean	cytosol	35.6	55.74
GSMUA_Achr1P27670_001	Banana	cytosol	9.51	55.56
GSMUA_Achr1P27660_001	Banana	mitochondrion	23.1	52.8
KRH07005	Soybean	nucleus	17.66	52.42
CDY46124	Canola	cytosol	85.33	50.65
CDY44519	Canola	cytosol, nucleus	66.85	47.4
GSMUA_Achr3P21370_001	Banana	cytosol	49.46	45.84
GSMUA_AchrUn_...	Banana	cytosol	29.62	45.61
GSMUA_AchrUn_...	Banana	cytosol	44.57	45.05
GSMUA_Achr1P25940_001	Banana	cytosol	36.14	44.78
GSMUA_AchrUn_...	Banana	nucleus	49.73	44.53
GSMUA_Achr1P28050_001	Banana	cytosol	48.64	43.98
CDX98239	Canola	nucleus	15.49	42.54
CDY28290	Canola	cytosol, mitochondrion, nucleus	16.58	41.78
GSMUA_AchrUn_...	Banana	cytosol	33.97	40.98
GSMUA_AchrUn_...	Banana	cytosol	27.45	35.31
CDX78541	Canola	plastid	43.75	34.4
CDX70523	Canola	plastid	43.48	34.19
CDX94473	Canola	nucleus	42.93	33.47
CDX86737	Canola	nucleus	42.93	33.26
CDY10820	Canola	nucleus, plastid	42.12	32.98
CDY41283	Canola	nucleus, plastid	42.12	32.91
CDX90811	Canola	nucleus	39.67	32.23
CDY51550	Canola	nucleus	39.67	32.16
CDY04804	Canola	mitochondrion, plastid	13.32	30.62
CDX94136	Canola	nucleus, plastid	27.45	26.44
CDY71640	Canola	nucleus, plastid	12.77	19.58
CDX75342	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078FK05	InterPro:Apc4_WD40_dom	EnsemblPlants:CDY13491	ProteinID:CDY13491
ProteinID:CDY13491.1	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234
GO:GO:0051488	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00077794001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEB92A	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA03g52090DBnaA03g52090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK05]

Coordinates

chrLK032035:+:644332..646367

Molecular Weight (calculated)

40477.3 Da

IEP (calculated)

7.131

GRAVY (calculated)

-0.490

Length

368 amino acids

Sequence
(BLAST)

001: MDFDYAHYAL TEGNKGKDQV SSPSREAYRK QLAETMNLNH TRILAFRNKP LAPVELLPTD HSASLHQQPK SVKPRRYIPQ TSERTLDAPD IVDDFYLNLL
101: DWGSANVLAI ALGHTVYLWD ASTGSTSELV TIDEEKGPVT SINWAPDGRH VAVGLNNSEV QLWDSGSNRQ LRTLKGCHQS RVGSLAGHTQ EVCGLKWSGS
201: GQQLASGGND NVVHIWDRSV ASSNSTTQWL HRLEEHTSAV KATGGGGGDR TIKFWNTHTG ACLNSVDTGS QVCSLLWSKN ERELLSSHGF TQNQLTLWKY
301: PSMVKMAELT GHTSRVLYMA QSPDGYTVAS AAGDETLRFW NVFGVPETAK KAAPKATHEP FSHVNHIC

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.