Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26774 | Canola | mitochondrion | 37.31 | 65.45 |
| CDY59111 | Canola | nucleus | 53.89 | 48.15 |
| KRG94456 | Soybean | cytosol | 47.15 | 38.72 |
| CDY71694 | Canola | nucleus | 33.68 | 37.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.86 | 31.38 |
| GSMUA_Achr1P27660_001 | Banana | mitochondrion | 25.91 | 31.06 |
| AT4G33260.1 | Thale cress | nucleus | 70.47 | 30.43 |
| AT4G33270.1 | Thale cress | nucleus | 70.47 | 29.76 |
| CDY13491 | Canola | cytosol | 56.48 | 29.62 |
| Bra034555.1-P | Field mustard | nucleus | 56.99 | 29.02 |
| CDY52543 | Canola | nucleus | 60.62 | 27.34 |
| CDY59109 | Canola | nucleus | 58.55 | 26.97 |
| CDY59110 | Canola | nucleus | 58.55 | 26.97 |
| GSMUA_Achr1P25940_001 | Banana | cytosol | 39.9 | 25.93 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.93 | 25.9 |
| KRH44738 | Soybean | nucleus | 59.07 | 25.79 |
| KRH68047 | Soybean | nucleus | 60.1 | 25.38 |
| Solyc08g005420.2.1 | Tomato | nucleus | 58.55 | 25.22 |
| PGSC0003DMT400047585 | Potato | nucleus | 58.55 | 25.22 |
| CDX75343 | Canola | nucleus | 46.63 | 24.13 |
| CDX68960 | Canola | nucleus | 50.26 | 23.49 |
| GSMUA_Achr3P21370_001 | Banana | cytosol | 44.56 | 21.66 |
| GSMUA_Achr1P28050_001 | Banana | cytosol | 43.52 | 20.64 |
| CDY44519 | Canola | cytosol, nucleus | 55.44 | 20.62 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.82 | 20.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.49 | 19.95 |
| CDY71065 | Canola | cytosol | 9.84 | 18.45 |
| CDX90811 | Canola | nucleus | 40.41 | 17.22 |
| CDY51550 | Canola | nucleus | 40.41 | 17.18 |
| CDX78541 | Canola | plastid | 40.93 | 16.88 |
| CDX70523 | Canola | plastid | 40.41 | 16.67 |
| CDX94473 | Canola | nucleus | 40.41 | 16.53 |
| CDX86737 | Canola | nucleus | 40.41 | 16.42 |
| CDX94136 | Canola | nucleus, plastid | 32.12 | 16.23 |
| GSMUA_AchrUn_... | Banana | cytosol | 7.25 | 16.09 |
| CDY04804 | Canola | mitochondrion, plastid | 12.95 | 15.62 |
| CDY10820 | Canola | nucleus, plastid | 37.82 | 15.53 |
| CDY41283 | Canola | nucleus, plastid | 37.82 | 15.5 |
| CDY46124 | Canola | cytosol | 44.04 | 13.71 |
| CDX98239 | Canola | nucleus | 7.77 | 11.19 |
| GSMUA_AchrUn_... | Banana | cytosol | 15.03 | 10.14 |
| CDY28290 | Canola | cytosol, mitochondrion, nucleus | 6.22 | 8.22 |
| KRH07005 | Soybean | nucleus | 3.11 | 4.84 |
| GSMUA_Achr1P27670_001 | Banana | cytosol | 1.55 | 4.76 |
| CDY71640 | Canola | nucleus, plastid | 5.18 | 4.17 |
| CDX75342 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A078GSV0 | EnsemblPlants:CDY28289 | ProteinID:CDY28289 | ProteinID:CDY28289.1 |
| InterPro:Cdc20/Fizzy | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0051488 |
| GO:GO:0097027 | GO:GO:1904668 | EnsemblPlantsGene:GSBRNA2T00040032001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19918 | PANTHER:PTHR19918:SF30 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EEC8F6 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaC03g66700DBnaC03g66700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSV0]
Coordinates
chrLK032217:-:146389..147198
Molecular Weight (calculated)
21519.3 Da
IEP (calculated)
9.276
GRAVY (calculated)
-0.497
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQVAPHLSF ATVGFCFQPS TKDIEGLSPV KSRILGVEQS YSDNWRNGRT DRQQRRTDQI TRLETYRGHT QEICGLKWSG SGQQLASGGN DNVVHIWDRS
101: VASSNSTTQW LHRLEEHTSA VKALAWCPFQ ANLLATGGGG GDRTIKFWNT HTGACLNSVD TGSQVSHGFA HNQLTLWKYP SMVKLTLWKY PSI
101: VASSNSTTQW LHRLEEHTSA VKALAWCPFQ ANLLATGGGG GDRTIKFWNT HTGACLNSVD TGSQVSHGFA HNQLTLWKYP SMVKLTLWKY PSI
001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR
Arabidopsis Description
CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.