Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX71989 | |
| CDX74120 | |
| CDX74867 | |
| CDX76119 | |
| CDX77145 | |
| CDX79070 | |
| CDX80511 | |
| CDX80516 | |
| CDX80828 | |
| CDX82264 | |
| CDX82833 | |
| CDX87437 | |
| CDX88180 | |
| CDX88475 | |
| CDX96631 | endoplasmic reticulum |
| CDX98240 | |
| CDY04835 | |
| CDY05493 | |
| CDY06071 | |
| CDY06219 | |
| CDY06464 | |
| CDY06653 | |
| CDY08664 | |
| CDY09966 | |
| CDY10211 | |
| CDY10442 | |
| CDY10563 | |
| CDY12300 | |
| CDY14051 | |
| CDY18835 | |
| CDY19801 | |
| CDY20922 | |
| CDY22476 | |
| CDY24564 | |
| CDY25160 | |
| CDY25374 | |
| CDY29224 | |
| CDY29520 | endoplasmic reticulum |
| CDY30292 | |
| CDY30517 | |
| CDY30835 | |
| CDY31481 | endoplasmic reticulum |
| CDY33444 | |
| CDY33634 | endoplasmic reticulum |
| CDY34315 | |
| CDY35917 | |
| CDY36063 | |
| CDY36901 | |
| CDY37656 | |
| CDY40364 | |
| CDY40468 | |
| CDY42227 | |
| CDY44628 | |
| CDY44976 | |
| CDY47689 | |
| CDY47916 | |
| CDY49157 | |
| CDY49990 | |
| CDY50950 | |
| CDY53538 | |
| CDY54909 | |
| CDY55173 | |
| CDY55544 | |
| CDY58069 | |
| CDY58070 | |
| CDY65003 | |
| CDY70805 | |
| CDY71046 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86737 | Canola | nucleus | 97.88 | 97.26 |
| CDX90811 | Canola | nucleus | 88.35 | 92.05 |
| CDY51550 | Canola | nucleus | 87.5 | 90.97 |
| CDY71065 | Canola | cytosol | 19.28 | 88.35 |
| AT4G11920.1 | Thale cress | nucleus | 85.81 | 85.26 |
| CDY10820 | Canola | nucleus, plastid | 78.18 | 78.51 |
| CDY41283 | Canola | nucleus, plastid | 78.18 | 78.34 |
| VIT_02s0025g04680.t01 | Wine grape | cytosol, nucleus, plastid | 72.46 | 75.66 |
| KRH57275 | Soybean | nucleus | 72.25 | 74.29 |
| CDX94136 | Canola | nucleus, plastid | 59.75 | 73.82 |
| KRH77460 | Soybean | nucleus, plastid | 69.7 | 71.68 |
| GSMUA_Achr11P... | Banana | plastid | 69.49 | 67.49 |
| KRH04001 | Soybean | mitochondrion | 72.88 | 65.4 |
| Zm00001d027430_P001 | Maize | plastid | 69.28 | 63.62 |
| TraesCS4B01G346200.2 | Wheat | nucleus, plastid | 68.86 | 63.35 |
| CDY71640 | Canola | nucleus, plastid | 32.2 | 63.33 |
| TraesCS4D01G341200.1 | Wheat | nucleus, plastid | 68.64 | 63.28 |
| KRH27985 | Soybean | nucleus, plastid | 60.81 | 63.22 |
| Zm00001d048472_P001 | Maize | nucleus, plastid | 69.28 | 62.88 |
| GSMUA_Achr11P... | Banana | plastid | 64.83 | 62.32 |
| Os03t0123300-01 | Rice | plastid | 67.8 | 61.19 |
| TraesCS1B01G166800.1 | Wheat | cytosol | 54.66 | 60.99 |
| TraesCS7B01G353500.1 | Wheat | plastid | 52.33 | 60.99 |
| CDX70523 | Canola | plastid | 59.32 | 59.83 |
| CDX78541 | Canola | plastid | 59.11 | 59.62 |
| HORVU4Hr1G084710.1 | Barley | cytosol, mitochondrion | 69.28 | 58.08 |
| CDY59111 | Canola | nucleus | 22.46 | 49.07 |
| OQU93351 | Sorghum | nucleus | 69.92 | 47.41 |
| CDY26774 | Canola | mitochondrion | 11.02 | 47.27 |
| CDY04804 | Canola | mitochondrion, plastid | 15.25 | 45.0 |
| CDY13491 | Canola | cytosol | 33.47 | 42.93 |
| CDY71694 | Canola | nucleus | 15.04 | 41.04 |
| CDY28289 | Canola | cytosol, extracellular, mitochondrion, plastid | 16.53 | 40.41 |
| CDX75343 | Canola | nucleus | 31.78 | 40.21 |
| CDY59109 | Canola | nucleus | 35.17 | 39.62 |
| CDY59110 | Canola | nucleus | 35.17 | 39.62 |
| CDY52543 | Canola | nucleus | 35.81 | 39.49 |
| CDX68960 | Canola | nucleus | 33.47 | 38.26 |
| CDY44519 | Canola | cytosol, nucleus | 36.02 | 32.76 |
| CDX98239 | Canola | nucleus | 7.63 | 26.87 |
| CDY46124 | Canola | cytosol | 31.57 | 24.03 |
| CDY28290 | Canola | cytosol, mitochondrion, nucleus | 6.36 | 20.55 |
| CDX75342 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:13.3.4.1.3 | Gene3D:2.130.10.10 | EnsemblPlants:CDX94473 | ProteinID:CDX94473 | ProteinID:CDX94473.1 | InterPro:Cdc20/Fizzy |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0051488 | GO:GO:0097027 |
| GO:GO:1904668 | EnsemblPlantsGene:GSBRNA2T00157654001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19918 | PANTHER:PTHR19918:SF31 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0004EE04F6 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
BnaC09g23630D
Coordinates
chrLK031882:-:28298..31140
Molecular Weight (calculated)
52024.5 Da
IEP (calculated)
8.960
GRAVY (calculated)
-0.399
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDGEDPPK KLNLPPSMNR PTVSLETQRI NRLIDSNHYH SPSKPIYSDR FIPSRSGSNF ALFGLEPSPN KDGKEDGPGS YAGMLRAALF EPDTPEKRDV
101: VTGFSPSRKI FRYKTETQRP VNSFSPLGGA GDDESPGVSR SPVKPTRNIL KSAYKVLDAP ALQDDFYLNL VDWSAQNVLA VGLANCVYLW NACTSKVTKL
201: CDIGIDESVC SVSWALRGTH LAIGTSSGTV EIWDALRCKR IRTMEGHRLR VGALAWSSSV LSSGSRDKSI LQRDIRCQED HVSKLTGHKS EVCGLKWSYD
301: NRELASGGND NKLLVWNQHS TQPVLRYCEH TAAVKAIAWS PHLHGLLASG GGTADRCIRF WNTTTNTSLS CVDTTSQVCN LAWSKNVNEL VSTHGYSQNQ
401: IIVWKYPTMS KLATLTGHTF RVLYLAVSPD GQTIVTGAGD ETLRFWNVFP SPKSQSRESK IGALSFGRTT IR
101: VTGFSPSRKI FRYKTETQRP VNSFSPLGGA GDDESPGVSR SPVKPTRNIL KSAYKVLDAP ALQDDFYLNL VDWSAQNVLA VGLANCVYLW NACTSKVTKL
201: CDIGIDESVC SVSWALRGTH LAIGTSSGTV EIWDALRCKR IRTMEGHRLR VGALAWSSSV LSSGSRDKSI LQRDIRCQED HVSKLTGHKS EVCGLKWSYD
301: NRELASGGND NKLLVWNQHS TQPVLRYCEH TAAVKAIAWS PHLHGLLASG GGTADRCIRF WNTTTNTSLS CVDTTSQVCN LAWSKNVNEL VSTHGYSQNQ
401: IIVWKYPTMS KLATLTGHTF RVLYLAVSPD GQTIVTGAGD ETLRFWNVFP SPKSQSRESK IGALSFGRTT IR
001: MEEDESTTPK KKSDSQLNLP PSMNRPTVSL ESRINRLIDS NHYHSPSKPI YSDRFIPSRS GSNFALFDLA SSSPNKKDGK EDGAGSYASL LKTALFGPVT
101: PEKSDVVNGF SPSGNIFRFK TETQRSLNLY PPFDSDVVSG VSPSPVKSPR KILRSPYKVL DAPALQDDFY LNLVDWSAQN VLAVGLGNCV YLWNACSSKV
201: TKLCDLGVDE TVCSVGWALR GTHLAIGTSS GTVQIWDVLR CKNIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRT QEDHVSKLKG HKSEICGLKW
301: SSDNRELASG GNDNKLFVWN QHSTQPVLRF CEHAAAVKAI AWSPHHFGLL ASGGGTADRC IRFWNTTTNT HLNCVDTNSQ VCNLVWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HSYRVLYLAV SPDGQTIVTG AGDETLRFWN VFPSPKSQSR ESEIGALSFG RTTIR
101: PEKSDVVNGF SPSGNIFRFK TETQRSLNLY PPFDSDVVSG VSPSPVKSPR KILRSPYKVL DAPALQDDFY LNLVDWSAQN VLAVGLGNCV YLWNACSSKV
201: TKLCDLGVDE TVCSVGWALR GTHLAIGTSS GTVQIWDVLR CKNIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRT QEDHVSKLKG HKSEICGLKW
301: SSDNRELASG GNDNKLFVWN QHSTQPVLRF CEHAAAVKAI AWSPHHFGLL ASGGGTADRC IRFWNTTTNT HLNCVDTNSQ VCNLVWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HSYRVLYLAV SPDGQTIVTG AGDETLRFWN VFPSPKSQSR ESEIGALSFG RTTIR
Arabidopsis Description
FZR1Protein FIZZY-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.