CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033879.1-P	Field mustard	mitochondrion	94.02	94.83
CDY50950	Canola	mitochondrion	94.02	94.83
CDY12300	Canola	mitochondrion	69.23	87.1
CDY49157	Canola	mitochondrion	69.23	87.1
AT1G31760.1	Thale cress	mitochondrion	66.67	69.64
GSMUA_AchrUn_...	Banana	cytosol	36.75	61.43
Solyc08g005590.2.1	Tomato	nucleus	57.27	54.92
PGSC0003DMT400047544	Potato	plastid	57.27	54.92
KRH76467	Soybean	nucleus	58.12	51.52
GSMUA_Achr7P17340_001	Banana	mitochondrion	56.41	50.77
KRH28989	Soybean	mitochondrion, plastid	55.56	49.24
Os02t0130000-01	Rice	mitochondrion, plastid	54.7	48.85
CDX76269	Canola	cytosol	35.04	46.59
Zm00001d015127_P001	Maize	mitochondrion	44.44	43.7
CDY51761	Canola	mitochondrion	47.01	41.04
TraesCSU01G113700.1	Wheat	plastid	48.72	39.58
Zm00001d053979_P001	Maize	mitochondrion	45.3	39.55
EES06225	Sorghum	mitochondrion	43.59	38.93
TraesCS6B01G116900.1	Wheat	plastid	46.15	37.76
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	47.01	37.67
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	39.32	35.38
CDY50651	Canola	plastid	43.59	34.93
CDX72477	Canola	plastid	40.17	33.81
CDY45303	Canola	plastid	40.17	33.33
CDY69869	Canola	plastid	38.46	32.85
CDX75421	Canola	plastid	38.46	32.61
HORVU6Hr1G015440.1	Barley	plastid	48.72	27.4
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	39.32	22.66
CDY27449	Canola	nucleus	30.77	11.11
CDX76378	Canola	cytosol	31.62	10.85
CDX79150	Canola	nucleus	29.91	10.0
CDX98747	Canola	nucleus	29.91	9.59
CDX94096	Canola	nucleus	29.91	9.38
CDX92300	Canola	nucleus	28.21	7.3
CDX99270	Canola	nucleus	27.35	6.9

Protein Annotations

EnsemblPlants:CDY47689	EnsemblPlantsGene:GSBRNA2T00087948001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8
PFAM:PF02201	ProteinID:CDY47689	ProteinID:CDY47689.1	SEG:seg	SMART:SM00151	SUPFAM:SSF47592
UniParc:UPI0004EB5D0C	UniProt:A0A078IE98	MapMan:35.2	:	:	:

Description

BnaCnng15310DBnaCnng15310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IE98]

Coordinates

chrLK032730:-:55603..56969

Molecular Weight (calculated)

12346.9 Da

IEP (calculated)

10.448

GRAVY (calculated)

-0.184

Length

117 amino acids

Sequence
(BLAST)

001: MAAAFSRVFG GCRTLMAKAA TNAAAAAGSG AGKEGKGILK TVPVSQTLAN FAGESELSRA TAVKKVWEHI KGNNLQNPEN RKQIICDDKL KTIFGDKDTV
101: GFTEIAKLLS PHFPKSV

Best Arabidopsis Sequence Match ( AT2G35605.1 )
(BLAST)

001: MSRVFGACRV LMAKAASSTG AKTGRQGTGI LKVVPVSKPL ANFIGENEVS RTTAVKKIWE YIKLNNLQNP VNKREILCDE QLKTIFSGKD TVGFLEISKL
101: LSQHFPKSA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q93W30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.