Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49157 | Canola | mitochondrion | 62.86 | 47.31 |
| CDY12300 | Canola | mitochondrion | 62.86 | 47.31 |
| VIT_02s0087g00810.t01 | Wine grape | mitochondrion | 71.43 | 43.48 |
| AT2G35605.1 | Thale cress | mitochondrion | 64.29 | 41.28 |
| GSMUA_Achr7P17340_001 | Banana | mitochondrion | 75.71 | 40.77 |
| Bra023201.1-P | Field mustard | mitochondrion | 65.71 | 40.0 |
| GSMUA_Achr4P05700_001 | Banana | cytosol, mitochondrion | 74.29 | 40.0 |
| VIT_15s0024g00650.t01 | Wine grape | mitochondrion | 72.86 | 39.84 |
| AT1G31760.1 | Thale cress | mitochondrion | 60.0 | 37.5 |
| Os02t0130000-01 | Rice | mitochondrion, plastid | 70.0 | 37.4 |
| PGSC0003DMT400004968 | Potato | plastid | 65.71 | 37.1 |
| Bra033879.1-P | Field mustard | mitochondrion | 61.43 | 37.07 |
| CDY50950 | Canola | mitochondrion | 61.43 | 37.07 |
| CDY47689 | Canola | mitochondrion | 61.43 | 36.75 |
| Solyc08g075400.2.1 | Tomato | plastid | 64.29 | 36.29 |
| Solyc08g005590.2.1 | Tomato | nucleus | 62.86 | 36.07 |
| PGSC0003DMT400047544 | Potato | plastid | 62.86 | 36.07 |
| KRH76467 | Soybean | nucleus | 64.29 | 34.09 |
| Zm00001d015127_P001 | Maize | mitochondrion | 57.14 | 33.61 |
| KRH28989 | Soybean | mitochondrion, plastid | 62.86 | 33.33 |
| Zm00001d053979_P001 | Maize | mitochondrion | 58.57 | 30.6 |
| TraesCSU01G113700.1 | Wheat | plastid | 62.86 | 30.56 |
| TraesCS6B01G116900.1 | Wheat | plastid | 61.43 | 30.07 |
| EES06225 | Sorghum | mitochondrion | 55.71 | 29.77 |
| TraesCS6A01G084700.1 | Wheat | cytosol, mitochondrion, plastid | 60.0 | 28.77 |
| AT3G03590.1 | Thale cress | mitochondrion, plastid | 58.57 | 28.67 |
| GSMUA_Achr7P26330_001 | Banana | plastid | 57.14 | 28.57 |
| GSMUA_Achr10P... | Banana | plastid | 55.71 | 27.66 |
| CDY51761 | Canola | mitochondrion | 52.86 | 27.61 |
| GSMUA_Achr3P30180_001 | Banana | plastid | 54.29 | 27.14 |
| CDY50651 | Canola | plastid | 54.29 | 26.03 |
| Bra031985.1-P | Field mustard | mitochondrion | 54.29 | 24.84 |
| GSMUA_Achr4P12450_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 64.29 | 22.17 |
| HORVU6Hr1G015440.1 | Barley | plastid | 60.0 | 20.19 |
| GSMUA_Achr2P13370_001 | Banana | cytosol | 17.14 | 18.75 |
| GSMUA_Achr4P28200_001 | Banana | nucleus | 40.0 | 8.86 |
| GSMUA_Achr3P11900_001 | Banana | cytosol | 34.29 | 6.58 |
| GSMUA_Achr1P19520_001 | Banana | cytosol | 34.29 | 6.5 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP04390_001 | EnsemblPlants:GSMUA_AchrUn_randomT04390_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG04390_001 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | PANTHER:PTHR13844 |
| PANTHER:PTHR13844:SF8 | PFAM:PF02201 | SMART:SM00151 | SUPFAM:SSF47592 | UniParc:UPI000295AD7F | UniProt:M0U6A1 |
| MapMan:35.2 | : | : | : | : | : |
Description
Protein TRI1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04390_001]
Coordinates
chrchrUn_random:-:18115159..18117719
Molecular Weight (calculated)
8079.0 Da
IEP (calculated)
10.162
GRAVY (calculated)
-0.570
Length
70 amino acids
Sequence
(BLAST)
(BLAST)
1: MKKFLGVPEI SRVEAVKKIW EHIKANQLQN PTNKREICCD EKLKGIFDGR DKVGMMEIAK LLTPHFPKSN
001: MSRVFGACRV LMAKAASSTG AKTGRQGTGI LKVVPVSKPL ANFIGENEVS RTTAVKKIWE YIKLNNLQNP VNKREILCDE QLKTIFSGKD TVGFLEISKL
101: LSQHFPKSA
101: LSQHFPKSA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q93W30]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.