CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031985.1-P	Field mustard	mitochondrion	92.54	81.05
CDY50651	Canola	plastid	86.57	79.45
AT3G03590.1	Thale cress	mitochondrion, plastid	72.39	67.83
GSMUA_AchrUn_...	Banana	cytosol	27.61	52.86
PGSC0003DMT400004968	Potato	plastid	47.01	50.81
VIT_15s0024g00650.t01	Wine grape	mitochondrion	48.51	50.78
CDY12300	Canola	mitochondrion	35.07	50.54
CDY49157	Canola	mitochondrion	35.07	50.54
Solyc08g075400.2.1	Tomato	plastid	46.27	50.0
VIT_02s0087g00810.t01	Wine grape	mitochondrion	42.54	49.57
GSMUA_Achr7P17340_001	Banana	mitochondrion	47.01	48.46
CDX76269	Canola	cytosol	31.34	47.73
CDY50950	Canola	mitochondrion	41.04	47.41
CDY47689	Canola	mitochondrion	41.04	47.01
TraesCS6B01G116900.1	Wheat	plastid	49.25	46.15
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	50.0	45.89
Os02t0130000-01	Rice	mitochondrion, plastid	44.78	45.8
TraesCSU01G113700.1	Wheat	plastid	48.51	45.14
Zm00001d015127_P001	Maize	mitochondrion	39.55	44.54
Zm00001d053979_P001	Maize	mitochondrion	41.04	41.04
EES06225	Sorghum	mitochondrion	38.06	38.93
CDY69869	Canola	plastid	36.57	35.77
CDX75421	Canola	plastid	36.57	35.51
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	34.33	35.38
CDY45303	Canola	plastid	36.57	34.75
CDX72477	Canola	plastid	35.82	34.53
HORVU6Hr1G015440.1	Barley	plastid	45.52	29.33
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	32.84	21.67
CDX76378	Canola	cytosol	27.61	10.85
CDY27449	Canola	nucleus	26.12	10.8
CDX94096	Canola	nucleus	26.87	9.65
CDX98747	Canola	nucleus	26.12	9.59
CDX79150	Canola	nucleus	24.63	9.43
CDX92300	Canola	nucleus	24.63	7.3
CDX99270	Canola	nucleus	23.88	6.9

Protein Annotations

EnsemblPlants:CDY51761	EnsemblPlantsGene:GSBRNA2T00004130001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8
PFAM:PF02201	ProteinID:CDY51761	ProteinID:CDY51761.1	SEG:seg	SMART:SM00151	SUPFAM:SSF47592
UniParc:UPI0004EE5A36	UniProt:A0A078IP71	MapMan:35.2	:	:	:

Description

BnaA05g32850DBnaA05g32850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IP71]

Coordinates

chrLK033024:+:72633..73829

Molecular Weight (calculated)

14486.3 Da

IEP (calculated)

10.487

GRAVY (calculated)

-0.252

Length

134 amino acids

Sequence
(BLAST)

001: MSSVAARVFR GCRSLLAPAS LAATSSALSS SRSISTPKSK PDSLAKKTPR TTGIFKATPV SPALAHFLGT GETTRTDAVK EVWTYVKSHD LQNPADKREI
101: FCDEKLKQIF EGKDKVGFLE VTNLLSTHFV KTTA

Best Arabidopsis Sequence Match ( AT3G03590.1 )
(BLAST)

001: MSSVAAMVFR GARSLLAPAS RATSSLVSAG STKKPAAKPK AKAKPKPKAK SDSPAKKTPR STGIFKVTPV SPVLAQFLGT GETSRTDAIK GIWTYIKSHD
101: LQNPADKREI FCDETLKLIF EGKDKVGFLE ISKLLSPHFV KTA

Arabidopsis Description

At3g03590 [Source:UniProtKB/TrEMBL;Acc:Q9SS61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.