Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76378 | Canola | cytosol | 92.9 | 88.27 |
| CDX98747 | Canola | nucleus | 87.04 | 77.26 |
| CDX94096 | Canola | nucleus | 85.8 | 74.53 |
| CDX79150 | Canola | nucleus | 79.32 | 73.43 |
| AT4G22360.1 | Thale cress | nucleus | 82.72 | 69.61 |
| VIT_00s0187g00240.t01 | Wine grape | nucleus | 62.65 | 59.01 |
| KRH01994 | Soybean | cytosol | 59.57 | 58.66 |
| KRH51159 | Soybean | cytosol | 59.88 | 58.43 |
| VIT_00s0187g00190.t01 | Wine grape | cytosol | 62.35 | 58.21 |
| Solyc11g012290.1.1 | Tomato | cytosol | 58.02 | 52.37 |
| PGSC0003DMT400034549 | Potato | cytosol | 57.72 | 51.52 |
| TraesCS7D01G242300.1 | Wheat | plastid | 35.8 | 48.95 |
| GSMUA_Achr3P11900_001 | Banana | cytosol | 50.62 | 44.93 |
| GSMUA_Achr1P19520_001 | Banana | cytosol | 50.93 | 44.72 |
| Os08t0502800-01 | Rice | nucleus | 48.15 | 38.42 |
| KXG27277 | Sorghum | cytosol | 46.3 | 37.97 |
| CDX76269 | Canola | cytosol | 10.19 | 37.5 |
| HORVU7Hr1G049900.8 | Barley | cytosol, nucleus, plastid | 38.89 | 37.39 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 46.3 | 36.14 |
| HORVU2Hr1G109030.1 | Barley | cytosol | 45.68 | 36.1 |
| Os04t0665500-01 | Rice | cytosol | 42.9 | 35.92 |
| TraesCS2D01G488600.1 | Wheat | cytosol | 45.99 | 35.82 |
| Zm00001d052873_P001 | Maize | cytosol | 46.91 | 35.76 |
| Zm00001d026541_P001 | Maize | cytosol | 43.21 | 35.71 |
| KXG25652 | Sorghum | nucleus | 46.91 | 35.51 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 45.68 | 35.41 |
| TraesCS2B01G515900.1 | Wheat | plastid | 37.96 | 34.65 |
| Zm00001d001937_P003 | Maize | cytosol | 45.68 | 34.42 |
| CDX75421 | Canola | plastid | 13.89 | 32.61 |
| CDY49157 | Canola | mitochondrion | 9.26 | 32.26 |
| CDY45303 | Canola | plastid | 13.89 | 31.91 |
| CDX72477 | Canola | plastid | 13.58 | 31.65 |
| CDY69869 | Canola | plastid | 13.27 | 31.39 |
| CDY12300 | Canola | mitochondrion | 8.95 | 31.18 |
| CDY47689 | Canola | mitochondrion | 11.11 | 30.77 |
| CDY50950 | Canola | mitochondrion | 10.8 | 30.17 |
| CDY51761 | Canola | mitochondrion | 10.8 | 26.12 |
| CDX92300 | Canola | nucleus | 35.49 | 25.44 |
| CDX99270 | Canola | nucleus | 36.11 | 25.22 |
| CDY50651 | Canola | plastid | 10.8 | 23.97 |
Protein Annotations
| Gene3D:1.10.245.10 | MapMan:35.2 | GO:A0A078GQH6 | UniProt:A0A078GQH6 | EnsemblPlants:CDY27449 | ProteinID:CDY27449 |
| ProteinID:CDY27449.1 | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00037451001 |
| InterPro:IPR036885 | PFAM:PF02201 | PFAM:PF08766 | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF37 | SMART:SM00151 |
| SUPFAM:SSF109715 | SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | UniParc:UPI0004EE637B |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g64890DBnaC03g64890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQH6]
Coordinates
chrLK032204:+:489138..490996
Molecular Weight (calculated)
36044.1 Da
IEP (calculated)
7.919
GRAVY (calculated)
-0.494
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDQDLARG VETLLRQSDP TSLTSLTSVV HQLEAKLGLD LSDKTNFIRD QINLLLHSPH PLASSSSTPQ PPPQYLQQLH SGVNVPAKGH FALHTPQHFA
101: LQPPPPYHSY DLNFQQPQHH QRQGPSKSSA SAGTKRKGGP GGLNKVCRVS PELQVVVGEP ALPRTEIVRQ LWAYIRKNNL QDPSNKRKII CDDALRVVFE
201: TDCTDMFKMN KLLAKHILPL DPSKDSSQSK RAKAEVETKT KEPVSSTSST VSLSEPLAKF FGTGEMVMTD EEIICRVWEY IKLNHLEDPA NPMAIQCDEK
301: LRELLGCESI SAVGINEMLR RHIS
101: LQPPPPYHSY DLNFQQPQHH QRQGPSKSSA SAGTKRKGGP GGLNKVCRVS PELQVVVGEP ALPRTEIVRQ LWAYIRKNNL QDPSNKRKII CDDALRVVFE
201: TDCTDMFKMN KLLAKHILPL DPSKDSSQSK RAKAEVETKT KEPVSSTSST VSLSEPLAKF FGTGEMVMTD EEIICRVWEY IKLNHLEDPA NPMAIQCDEK
301: LRELLGCESI SAVGINEMLR RHIS
001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.