Factsheet for Os04t0665500-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27277	Sorghum	cytosol	75.45	73.92
TraesCS2B01G515900.1	Wheat	plastid	66.15	72.11
Zm00001d026541_P001	Maize	cytosol	71.83	70.92
HORVU2Hr1G109030.1	Barley	cytosol	74.16	70.0
Zm00001d001937_P003	Maize	cytosol	77.26	69.53
TraesCS2D01G488600.1	Wheat	cytosol	74.68	69.47
TraesCS2A01G488300.1	Wheat	cytosol	74.42	69.4
GSMUA_Achr1P19520_001	Banana	cytosol	49.61	52.03
GSMUA_Achr3P11900_001	Banana	cytosol	47.03	49.86
VIT_00s0187g00240.t01	Wine grape	nucleus	41.86	47.09
VIT_00s0187g00190.t01	Wine grape	cytosol	42.12	46.97
VIT_19s0090g01460.t01	Wine grape	cytosol	39.02	45.62
KRH51159	Soybean	cytosol	38.76	45.18
KRH01994	Soybean	cytosol	37.98	44.68
KRH46275	Soybean	cytosol	37.98	44.55
CDY27449	Canola	nucleus	35.92	42.9
PGSC0003DMT400034549	Potato	cytosol	39.79	42.42
Solyc11g012290.1.1	Tomato	cytosol	39.28	42.34
CDX98747	Canola	nucleus	39.28	41.64
CDX76378	Canola	cytosol	36.43	41.35
Bra019378.1-P	Field mustard	cytosol	38.5	40.93
Os08t0502800-01	Rice	nucleus	42.89	40.89
CDX79150	Canola	nucleus	36.95	40.86
CDX94096	Canola	nucleus	38.5	39.95
Bra020851.1-P	Field mustard	nucleus	33.07	39.88
Bra013614.1-P	Field mustard	nucleus	36.95	39.83
AT4G22360.1	Thale cress	nucleus	38.76	38.96
Os03t0761000-01	Rice	nucleus	10.59	28.47
Os02t0130000-01	Rice	mitochondrion, plastid	8.27	24.43
Os03t0764450-00	Rice	nucleus	23.0	18.74
Os12t0507500-00	Rice	plastid	7.49	16.11

Protein Annotations

EnsemblPlants:Os04t0665500-01	EnsemblPlantsGene:Os04g0665500	EntrezGene:4337317	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF19	PFAM:PF02201	ProteinID:BAS91502.1	RefSeq:XP_015636275.1	SEG:seg	SMART:SM00151
SUPFAM:SSF47592	UniParc:UPI00039397C9	UniProt:A0A0P0WG50	MapMan:35.2	:	:

Description

Similar to H1005F08.9 protein. (Os04t0665500-01)

Coordinates

chr4:+:33968605..33972525

Molecular Weight (calculated)

41068.6 Da

IEP (calculated)

8.047

GRAVY (calculated)

-0.147

Length

387 amino acids

Sequence
(BLAST)

001: MVSDQEIASC VESVLRSSGG AAGEPRSPPC CRSGAKLGVD LAHKATFIRD QMDLFFGPRL QPPLVAKAQA AAAAAPNPPP LVAAPAPAMP QVQVQAQLQQ
101: MQQQLAVLQP QLIFQAMPQL PAGVPGGAAG AVSPQPPVPA MAFYPPPPLA FRVTSGLAGV ATGGTVSFQQ PAPGTGGTAS PTAAVQAAGD NKESASKRKR
201: GGPGGLNKVC AISPELQTIV GETVMSRTQI VKQLWQYIRQ NNLQDPDDKR KIICNDELRV VFGTDTTDMF KMNKLLAKHI TPLDPKDQIR EAKKFKPSNV
301: ATQPMPLINQ PSVVISDALA KFIGMEGTVP QDDALRYLWD YIKANQLEDA ITGSILCDSK LQELFGCESI PSSGLSELLA HHFIKET

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.