Factsheet for VIT_19s0090g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46275	Soybean	cytosol	61.63	61.82
VIT_00s0187g00240.t01	Wine grape	nucleus	62.84	60.47
VIT_00s0187g00190.t01	Wine grape	cytosol	62.84	59.94
TraesCS7D01G242300.1	Wheat	plastid	38.97	54.43
GSMUA_Achr1P19520_001	Banana	cytosol	50.76	45.53
GSMUA_Achr3P11900_001	Banana	cytosol	49.55	44.93
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	42.9	42.14
KXG27277	Sorghum	cytosol	48.64	40.76
Os04t0665500-01	Rice	cytosol	45.62	39.02
TraesCS2B01G515900.1	Wheat	plastid	41.39	38.59
Zm00001d026541_P001	Maize	cytosol	45.62	38.52
Os08t0502800-01	Rice	nucleus	46.53	37.93
VIT_03s0063g01070.t01	Wine grape	nucleus	14.2	37.6
TraesCS2A01G488300.1	Wheat	cytosol	47.13	37.59
HORVU2Hr1G109030.1	Barley	cytosol	46.53	37.56
TraesCS2D01G488600.1	Wheat	cytosol	47.13	37.5
KXG25652	Sorghum	nucleus	47.73	36.92
Zm00001d001937_P003	Maize	cytosol	47.73	36.74
Zm00001d052873_P001	Maize	cytosol	47.13	36.71
TraesCS7A01G243700.1	Wheat	cytosol	46.22	36.6
VIT_07s0197g00070.t01	Wine grape	nucleus	27.49	30.54
VIT_15s0024g00650.t01	Wine grape	mitochondrion	11.18	28.91
VIT_03s0091g00430.t01	Wine grape	plastid	12.39	28.28
VIT_02s0087g00810.t01	Wine grape	mitochondrion	9.06	26.09

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100264067	wikigene:100264067	MapMan:35.2	ProteinID:CBI26717	ProteinID:CBI26717.3
UniProt:D7T858	InterPro:DEK_C	EMBL:FN595751	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	EntrezGene:LOC100264067	wikigene:LOC100264067	PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844
PANTHER:PTHR13844:SF10	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
TIGR:TC67501	UniParc:UPI000198561D	ArrayExpress:VIT_19s0090g01460	EnsemblPlantsGene:VIT_19s0090g01460	EnsemblPlants:VIT_19s0090g01460.t01	unigene:Vvi.12880
RefSeq:XP_002275854	RefSeq:XP_002275854.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:+:7512821..7517456

Molecular Weight (calculated)

36671.9 Da

IEP (calculated)

7.944

GRAVY (calculated)

-0.482

Length

331 amino acids

Sequence
(BLAST)

001: MVTDEAIAEA LDSLIRESTP SQFTSINGVV LQLESKLGLN LSHKLEFIRS QIHLFFQSHQ PQSQPPPPQP PSQQQPPKDH FTLQQATNFS TGPPNFAPHR
101: TEDLNFRRDP TPAPPAEPTG GPVAVPEAPP QESARAGTKR RGGPGGLNKV CGVSPELQTI VGQPALPRTE IVKQLWAYIR RNNLQDPSNK RKIICNDELR
201: LVFETDSTDM FKMNKLLAKH IIPLEPTKQS GEQSKKLKVD AGAGTKSSES GPYVVISEAL ANFFGTSGRE MLQSEVLRRV WEYIKVNHLE DPLNSMVILC
301: DAKLQEIFGC ESISALGIPE ILMRHHLCKR S

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.