Factsheet for Os08t0502800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G242300.1	Wheat	plastid	46.55	79.75
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	59.11	71.22
TraesCS7A01G243700.1	Wheat	cytosol	67.73	65.79
KXG25652	Sorghum	nucleus	68.23	64.72
Zm00001d052873_P001	Maize	cytosol	67.24	64.24
VIT_00s0187g00240.t01	Wine grape	nucleus	41.38	48.84
CDY27449	Canola	nucleus	38.42	48.15
VIT_00s0187g00190.t01	Wine grape	cytosol	40.89	47.84
CDX76378	Canola	cytosol	39.41	46.92
VIT_19s0090g01460.t01	Wine grape	cytosol	37.93	46.53
KRH01994	Soybean	cytosol	37.44	46.2
KRH51159	Soybean	cytosol	37.44	45.78
Bra020851.1-P	Field mustard	nucleus	35.96	45.48
KRH46275	Soybean	cytosol	36.95	45.45
CDX79150	Canola	nucleus	38.67	44.86
CDX98747	Canola	nucleus	39.66	44.11
Bra013614.1-P	Field mustard	nucleus	38.42	43.45
Bra019378.1-P	Field mustard	cytosol	38.92	43.41
Os04t0665500-01	Rice	cytosol	40.89	42.89
AT4G22360.1	Thale cress	nucleus	40.64	42.86
CDX94096	Canola	nucleus	39.16	42.63
Solyc11g012290.1.1	Tomato	cytosol	36.95	41.78
PGSC0003DMT400034549	Potato	cytosol	36.95	41.32
Os03t0761000-01	Rice	nucleus	9.61	27.08
Os02t0130000-01	Rice	mitochondrion, plastid	8.62	26.72
Os03t0764450-00	Rice	nucleus	24.63	21.05
Os12t0507500-00	Rice	plastid	7.64	17.22

Protein Annotations

Gene3D:1.10.245.10	MapMan:35.2	EntrezGene:4345963	ProteinID:BAD08918.1	ProteinID:BAD09270.1	ProteinID:BAF24085.1
ProteinID:BAT06132.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	EnsemblPlantsGene:Os08g0502800
EnsemblPlants:Os08t0502800-01	PFAM:PF02201	PANTHER:PTHR13844	PANTHER:PTHR13844:SF10	UniProt:Q6ZFI5	SMART:SM00151
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI000023AC65	RefSeq:XP_015651058.1
SEG:seg	:	:	:	:	:

Description

SWIB/MDM2 domain containing protein. (Os08t0502800-01)

Coordinates

chr8:+:24837690..24842084

Molecular Weight (calculated)

43437.6 Da

IEP (calculated)

9.115

GRAVY (calculated)

-0.384

Length

406 amino acids

Sequence
(BLAST)

001: MLSDQELARY VESFVRQAAA VPGAVAAAGG ISAESVARQL GPQLGLDLTP KAPLIRDILL ALFSPPPQGA PFTSSAPSPS ASASASASAA AAGHFFSQQQ
101: QQQQLQTFLT ASQQYQHRGG AGAAAAPPSA YGVAAAAAGY RYGQPFPQDE GAHLQRLVQM HHHQQQQQQQ QQQQMAAAAA GVAAAPPTAV ESPRPAAASK
201: KESASTGVKR RGGPGGLNKV CGVSPELQAI VGEPTMARTE IVKQLWAYIR RNNLQDPNNK RKIICNDELR LVFETDSTDM FKMNKLLAKH IRPLEAKKDS
301: NRDSKKLKPV DSEPISPAET DVNQLPIILS DALASFFGTG EKEMPSSEAV KRVWDHIKSN NLEDPANPTM ILCDSKLKQL FGCESLTAVS VSELLSQHLF
401: KQPNKL

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.