Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019378.1-P | Field mustard | cytosol | 96.71 | 96.98 |
| CDX94096 | Canola | nucleus | 93.7 | 91.69 |
| CDX76378 | Canola | cytosol | 81.92 | 87.68 |
| CDY27449 | Canola | nucleus | 77.26 | 87.04 |
| CDX79150 | Canola | nucleus | 78.9 | 82.29 |
| AT4G22360.1 | Thale cress | nucleus | 86.58 | 82.08 |
| VIT_00s0187g00240.t01 | Wine grape | nucleus | 60.0 | 63.66 |
| VIT_00s0187g00190.t01 | Wine grape | cytosol | 59.73 | 62.82 |
| KRH01994 | Soybean | cytosol | 56.16 | 62.31 |
| KRH51159 | Soybean | cytosol | 55.62 | 61.14 |
| Solyc11g012290.1.1 | Tomato | cytosol | 52.33 | 53.2 |
| PGSC0003DMT400034549 | Potato | cytosol | 52.6 | 52.89 |
| TraesCS7D01G242300.1 | Wheat | plastid | 33.15 | 51.05 |
| GSMUA_Achr3P11900_001 | Banana | cytosol | 46.85 | 46.85 |
| GSMUA_Achr1P19520_001 | Banana | cytosol | 47.12 | 46.61 |
| Os08t0502800-01 | Rice | nucleus | 44.11 | 39.66 |
| KXG27277 | Sorghum | cytosol | 42.74 | 39.49 |
| Os04t0665500-01 | Rice | cytosol | 41.64 | 39.28 |
| HORVU7Hr1G049900.8 | Barley | cytosol, nucleus, plastid | 36.16 | 39.17 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 43.01 | 37.83 |
| HORVU2Hr1G109030.1 | Barley | cytosol | 42.47 | 37.8 |
| KXG25652 | Sorghum | nucleus | 44.11 | 37.62 |
| Zm00001d026541_P001 | Maize | cytosol | 40.27 | 37.5 |
| CDX76269 | Canola | cytosol | 9.04 | 37.5 |
| TraesCS2D01G488600.1 | Wheat | cytosol | 42.74 | 37.5 |
| Zm00001d052873_P001 | Maize | cytosol | 43.56 | 37.41 |
| TraesCS2B01G515900.1 | Wheat | plastid | 35.62 | 36.62 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 41.92 | 36.6 |
| Zm00001d001937_P003 | Maize | cytosol | 42.47 | 36.05 |
| CDX75421 | Canola | plastid | 12.88 | 34.06 |
| CDY45303 | Canola | plastid | 12.88 | 33.33 |
| CDX72477 | Canola | plastid | 12.6 | 33.09 |
| CDY69869 | Canola | plastid | 12.33 | 32.85 |
| CDY12300 | Canola | mitochondrion | 8.22 | 32.26 |
| CDY49157 | Canola | mitochondrion | 7.95 | 31.18 |
| CDY47689 | Canola | mitochondrion | 9.59 | 29.91 |
| CDY50950 | Canola | mitochondrion | 9.32 | 29.31 |
| CDY51761 | Canola | mitochondrion | 9.59 | 26.12 |
| CDX92300 | Canola | nucleus | 31.78 | 25.66 |
| CDX99270 | Canola | nucleus | 31.51 | 24.78 |
| CDY50651 | Canola | plastid | 9.86 | 24.66 |
Protein Annotations
| Gene3D:1.10.245.10 | MapMan:35.2 | GO:A0A078ECJ4 | EnsemblPlants:CDX98747 | ProteinID:CDX98747 | ProteinID:CDX98747.1 |
| InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00106819001 | InterPro:IPR036885 |
| PFAM:PF02201 | PFAM:PF08766 | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF37 | SMART:SM00151 | SUPFAM:SSF109715 |
| SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | UniParc:UPI0004EF4212 | SEG:seg |
Description
BnaA03g45320D
Coordinates
chrLK031906:+:1002166..1005143
Molecular Weight (calculated)
40292.1 Da
IEP (calculated)
7.941
GRAVY (calculated)
-0.560
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDQDLAKG VETLLRQSDP SSLTSLTSVV QQLEAKLGLD LTEKTSFIRD QINLLLRPHP PPSSSSASAS ASTAQPPPPP PQQLHFGVNV PGKGHFALHP
101: PASYSQQYPQ HFALQPPPPP PYHSYDLNFR QPYPPYMPPP QHQHSQLQSP RQGPSVLVSQ APKESAPPAG TKRKGGPGGL NKVCRVSPEL EVVVGEPALP
201: RTEIVRQLWA YIRKNNLQDP SNKRKIICDD ALRVVFETDC TDMFKMNKLL AKHILPLDPS KDSGQAKRAK AEVETKTETT EPVSSTSAVA LSEPLAKFFG
301: TGETEMTEEA IIRRVWEYIK LNNLEDPANP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKPS
101: PASYSQQYPQ HFALQPPPPP PYHSYDLNFR QPYPPYMPPP QHQHSQLQSP RQGPSVLVSQ APKESAPPAG TKRKGGPGGL NKVCRVSPEL EVVVGEPALP
201: RTEIVRQLWA YIRKNNLQDP SNKRKIICDD ALRVVFETDC TDMFKMNKLL AKHILPLDPS KDSGQAKRAK AEVETKTETT EPVSSTSAVA LSEPLAKFFG
301: TGETEMTEEA IIRRVWEYIK LNNLEDPANP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKPS
001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.