CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01994	Soybean	cytosol	93.37	94.22
VIT_00s0187g00240.t01	Wine grape	nucleus	69.58	67.15
VIT_00s0187g00190.t01	Wine grape	cytosol	69.88	66.86
CDY27449	Canola	nucleus	58.43	59.88
CDX76378	Canola	cytosol	61.45	59.82
Bra020851.1-P	Field mustard	nucleus	55.72	57.63
CDX79150	Canola	nucleus	59.64	56.57
KRH46275	Soybean	cytosol	55.72	56.06
Bra019378.1-P	Field mustard	cytosol	61.14	55.77
Bra013614.1-P	Field mustard	nucleus	60.24	55.71
Solyc11g012290.1.1	Tomato	cytosol	60.24	55.71
PGSC0003DMT400034549	Potato	cytosol	60.84	55.65
CDX98747	Canola	nucleus	61.14	55.62
CDX94096	Canola	nucleus	61.45	54.69
AT4G22360.1	Thale cress	nucleus	61.75	53.25
TraesCS7D01G242300.1	Wheat	plastid	37.65	52.74
GSMUA_Achr1P19520_001	Banana	cytosol	51.81	46.61
GSMUA_Achr3P11900_001	Banana	cytosol	50.0	45.48
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	40.66	40.06
KXG27277	Sorghum	cytosol	46.69	39.24
Os04t0665500-01	Rice	cytosol	45.18	38.76
Os08t0502800-01	Rice	nucleus	45.78	37.44
HORVU2Hr1G109030.1	Barley	cytosol	46.08	37.32
Zm00001d026541_P001	Maize	cytosol	43.98	37.24
TraesCS2A01G488300.1	Wheat	cytosol	46.39	37.11
TraesCS2D01G488600.1	Wheat	cytosol	46.39	37.02
KXG25652	Sorghum	nucleus	47.29	36.68
Zm00001d052873_P001	Maize	cytosol	46.39	36.24
TraesCS7A01G243700.1	Wheat	cytosol	45.48	36.12
TraesCS2B01G515900.1	Wheat	plastid	38.25	35.77
Zm00001d001937_P003	Maize	cytosol	45.78	35.35
KRH76945	Soybean	nucleus	31.02	30.56
KRH28515	Soybean	nucleus	31.33	30.06
KRH27569	Soybean	nucleus	12.95	29.05
KRH76467	Soybean	nucleus	11.45	28.79
KRH28989	Soybean	mitochondrion, plastid	11.45	28.79
KRH77941	Soybean	nucleus	12.05	28.78

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100788173	MapMan:35.2	EMBL:ACUP02004729	InterPro:DEK_C	EnsemblPlantsGene:GLYMA_07G265400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1KNI9	InterPro:IPR036885	EnsemblPlants:KRH51159
ProteinID:KRH51159	ProteinID:KRH51159.1	PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844	PANTHER:PTHR13844:SF10
SMART:SM00151	SUPFAM:SSF109715	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
UniParc:UPI000233908A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:43939940..43943857

Molecular Weight (calculated)

36937.6 Da

IEP (calculated)

7.120

GRAVY (calculated)

-0.352

Length

332 amino acids

Sequence
(BLAST)

001: MVTDQDIAKG VESLLRHSDP NSITTVNGVV QQLEAKLGLD LSHKASFIRD QIDHLLRSQP QAFVPHPPPL HKDYFAPHPQ PHFPTTHFPS HFALHDEINF
101: QQHPRAPPPC KVETFPPQNA HTVAPPQVPK ESVQTGAKRR GGAGGLNKVC GVSPELQAVV GEPAMPRTEI VRQLWAYIKK NNLQDPGNKR KIICDDALRL
201: VFETDCTDMF KMNQLLAKHI IPLGPTKESQ AKRVKLDAEI KIESAEPASS TVVISEALAK FLGTEGREMQ QAEAIRLVWE YIKLHHLEDP LNAMVILCDA
301: KLQELLGCES ISALGIPEML ARHHLFKQSD TC

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.