CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77941	Soybean	nucleus	82.43	87.77
CDX76269	Canola	cytosol	37.84	63.64
CDY69869	Canola	plastid	50.68	54.74
Bra011519.1-P	Field mustard	plastid	50.68	54.35
CDX75421	Canola	plastid	50.68	54.35
AT2G14880.1	Thale cress	plastid	49.32	51.77
PGSC0003DMT400059663	Potato	plastid	47.97	51.45
PGSC0003DMT400025339	Potato	plastid	46.62	50.37
CDX72477	Canola	plastid	47.3	50.36
PGSC0003DMT400066526	Potato	plastid	49.32	50.34
VIT_03s0091g00430.t01	Wine grape	plastid	49.32	50.34
Bra017644.1-P	Field mustard	plastid	47.3	49.65
CDY45303	Canola	plastid	47.3	49.65
Solyc01g107330.2.1	Tomato	plastid	48.65	49.32
AT4G34290.1	Thale cress	plastid	47.97	49.31
GSMUA_Achr10P...	Banana	plastid	43.24	45.39
GSMUA_Achr3P30180_001	Banana	plastid	41.22	43.57
GSMUA_Achr7P26330_001	Banana	plastid	39.86	42.14
Bra034617.1-P	Field mustard	cytosol	22.3	39.29
EES17082	Sorghum	plastid	38.51	38.78
TraesCS5D01G115900.1	Wheat	plastid	39.86	38.56
TraesCS5B01G108300.1	Wheat	plastid	39.86	38.56
HORVU5Hr1G028290.1	Barley	plastid	39.19	37.91
Zm00001d035321_P001	Maize	plastid	36.49	37.76
TraesCS5A01G105100.1	Wheat	plastid	39.19	37.42
KRH76467	Soybean	nucleus	33.11	37.12
KRH28989	Soybean	mitochondrion, plastid	33.11	37.12
Os12t0507500-00	Rice	plastid	29.05	23.89
KRH01994	Soybean	cytosol	29.05	13.07
KRH51159	Soybean	cytosol	29.05	12.95
KRH46275	Soybean	cytosol	28.38	12.73
KRH28515	Soybean	nucleus	27.7	11.85
KRH76945	Soybean	nucleus	26.35	11.57

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100306198	MapMan:35.2	EMBL:ACUP02006727	EMBL:BT090190	UniProt:C6SYE2
EnsemblPlantsGene:GLYMA_11G001000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	EnsemblPlants:KRH27569
ProteinID:KRH27569	ProteinID:KRH27569.1	PFAM:PF02201	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8	SMART:SM00151
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI0001B15793	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:55209..57505

Molecular Weight (calculated)

16529.2 Da

IEP (calculated)

10.215

GRAVY (calculated)

-0.351

Length

148 amino acids

Sequence
(BLAST)

001: MALSFGFGLL SSSSSSSSLC VLPPSETHTF MMRPSASSGL RMMRTSRITC CTLSQSSKPA RKIRGIMKPR KVSPEMEDLV GAPEMARTQV LKRIWAYIKD
101: NNLQDPTDKR TINCDEKLKK VFAGKDQVEM LEIARLISPH FLKSESES

Best Arabidopsis Sequence Match ( AT2G14880.1 )
(BLAST)

001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.