Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G108300.1 | Wheat | plastid | 99.35 | 99.35 |
| HORVU5Hr1G028290.1 | Barley | plastid | 98.04 | 98.04 |
| TraesCS5A01G105100.1 | Wheat | plastid | 98.69 | 97.42 |
| Zm00001d035321_P001 | Maize | plastid | 72.55 | 77.62 |
| EES17082 | Sorghum | plastid | 73.2 | 76.19 |
| CDX76269 | Canola | cytosol | 33.33 | 57.95 |
| Os12t0507500-00 | Rice | plastid | 63.4 | 53.89 |
| TraesCS5D01G408400.1 | Wheat | plastid | 47.71 | 52.52 |
| VIT_03s0091g00430.t01 | Wine grape | plastid | 49.67 | 52.41 |
| GSMUA_Achr10P... | Banana | plastid | 47.71 | 51.77 |
| PGSC0003DMT400066526 | Potato | plastid | 47.06 | 49.66 |
| PGSC0003DMT400025339 | Potato | plastid | 44.44 | 49.63 |
| Solyc01g107330.2.1 | Tomato | plastid | 46.41 | 48.63 |
| PGSC0003DMT400059663 | Potato | plastid | 43.79 | 48.55 |
| CDX75421 | Canola | plastid | 41.83 | 46.38 |
| Bra011519.1-P | Field mustard | plastid | 41.83 | 46.38 |
| CDX72477 | Canola | plastid | 41.83 | 46.04 |
| CDY69869 | Canola | plastid | 41.18 | 45.99 |
| AT2G14880.1 | Thale cress | plastid | 41.83 | 45.39 |
| CDY45303 | Canola | plastid | 41.18 | 44.68 |
| Bra017644.1-P | Field mustard | plastid | 40.52 | 43.97 |
| AT4G34290.1 | Thale cress | plastid | 41.18 | 43.75 |
| Bra034617.1-P | Field mustard | cytosol | 22.88 | 41.67 |
| KRH77941 | Soybean | nucleus | 36.6 | 40.29 |
| KRH27569 | Soybean | nucleus | 38.56 | 39.86 |
| TraesCS7D01G242300.1 | Wheat | plastid | 21.57 | 13.92 |
| TraesCS5D01G411700.1 | Wheat | nucleus | 28.1 | 12.65 |
| TraesCS2D01G488600.1 | Wheat | cytosol | 27.45 | 10.1 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G115900.1 | EnsemblPlantsGene:TraesCS5D01G115900 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF21 |
| PFAM:PF02201 | SEG:seg | SMART:SM00151 | SUPFAM:SSF47592 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5D:+:135641949..135645163
Molecular Weight (calculated)
16281.1 Da
IEP (calculated)
11.049
GRAVY (calculated)
-0.097
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATAIRSGE LLAFPAALRR GLPVASASVV AFRLRAPVAG RVAVRVVAAA AEGAGAEAEA EGKPKPKKKR AASGIMKPKP ISPELREFVG GAAELPRTEA
101: LKIIWAHIKG NNLQDPENKK IIVCDEKLKK IFGGRDRVGF LEISGLLNPH FQK
101: LKIIWAHIKG NNLQDPENKK IIVCDEKLKK IFGGRDRVGF LEISGLLNPH FQK
001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.